- Probe CUST_12464_PI390587928
- Source Contig U35_43162
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12464_PI390587928 | Hv_44K_v2 | ATTAATGCAATGTTGACGCCACTGGTGAGGACTTCTTTGTTGAACCTGCTGATGAGAGGA | 10 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.650 | 0.758 | 1.633 | 1.800 | 0.984 | 1.002 |
| Raw | 3445.413 | 6369.927 | 11795.083 | 20601.670 | 4002.203 | 4421.927 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC39514 | 144 | 3e-25 | 11 - 70 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43162 | 144 | 3e-25 | 11 - 70 | 100 | 60 / 60 | plus |
Contig Sequence (144 bp)
>U35_43162 144 Hv_44K_v2 GATCAGGAGTATTAATGCAATGTTGACGCCACTGGTGAGGACTTCTTTGTTGAACCTGCT GATGAGAGGAGGCCTTTACGCCCGCTCTTGGATGTTGGTCTTATCAGGACTACGACTGGA AACCGTGTGTTTGGTGCACTTAAG
Homology of Contig U35_43162 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |