- Probe CUST_12450_PI390587928
- Source Contig U35_43170
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12450_PI390587928 | Hv_44K_v2 | TGTCTTACTAGCCACCACTCAGTACCGAGGGCCTCCATAAGCATGTCGACTACCTGATCC | 105 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.461 | 3.004 | 1.568 | 0.832 | 0.352 | 0.375 |
| Raw | 52.651 | 99.733 | 45.396 | 38.538 | 4.429 | 6.083 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC39527 | 165 | 3e-25 | 106 - 165 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43170 | 165 | 3e-25 | 106 - 165 | 100 | 60 / 60 | plus |
Contig Sequence (165 bp)
>U35_43170 165 Hv_44K_v2 TCAGGCGCAGCTCGAACGGTGCTCGCCTCGGCAGCGTCAGCAACAGTGGAAGGATCACGA GCATGCAGGAGTAGCCCATCGAGGGCATAAAGAAGCTCGAGACCCTGTCTTACTAGCCAC CACTCAGTACCGAGGGCCTCCATAAGCATGTCGACTACCTGATCC
Homology of Contig U35_43170 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |