- Probe CUST_12449_PI390587928
- Source Contig U35_43171
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12449_PI390587928 | Hv_44K_v2 | GGGATCATACACACAAACCTCGATCTGAATAATCCCTCTATATATGTGGTGAAGAAAAAA | 41 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.039 | 0.163 | 0.656 | 2.485 | 1.784 | 1.948 |
| Raw | 5.943 | 44.721 | 147.457 | 820.463 | 224.481 | 264.475 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC39530 | 112 | 3e-25 | 42 - 101 | 100 | 60 / 60 | plus | ABC39530 |
| Harvest35 | U35_43171 | 112 | 3e-25 | 42 - 101 | 100 | 60 / 60 | plus |
Contig Sequence (112 bp)
>U35_43171 112 Hv_44K_v2 TCGCCATGACTAATTGTGTGGCTGATCACCCATTGATTGTTGGGATCATACACACAAACC TCGATCTGAATAATCCCTCTATATATGTGGTGAAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_43171 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |