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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12443_PI390587928Hv_44K_v2AATGTGCCGTACGTGTAAATTATCAAGGGCAGAAGAAACATGACCGTTCTGATTAAAAAA427GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 5.4165.6621.4030.7420.2180.351
Raw 3484.7636114.9351212.4481085.290101.435182.949



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_57061.212113e-211003 - 105610054 / 54plus ABC00168 ABC00820 ABC50309
JLOC1JLOC1_36933.116392e-211232 - 128510054 / 54plus
Harvest21ABC395684983e-25428 - 48710060 / 60plus
Harvest21ABC001686551e-23584 - 6449860 / 61plusABC00168
Harvest21ABC503092376e-2238 - 9110054 / 54minusABC50309
Harvest21ABC0082014376e-221111 - 116410054 / 54plusABC00820
Harvest35U35_431854983e-25428 - 48710060 / 60plus
Harvest35U35_393165686e-2273 - 12610054 / 54minus
Harvest35U35_366506546e-22584 - 63710054 / 54plus
Harvest35U35_34114376e-221111 - 116410054 / 54plus



Contig Sequence (498 bp)

>U35_43185 498 Hv_44K_v2
AGGCGCTCAACAAGTTTGGCGCGAACTGCGGCCCCGAGGCCGTTTGGTGCAAGACCGGCG
CCCTGCTCCTTGACGGCAACACCCTCAACTACTTGGGCAACAGCATCCCTATCAACCTGA
TCCTCGCCGTCGTCGCCGAGGTCGTCCTCGTCGGAGGCGCCGAGTACTACAGGATCACCA
ACGGACTGGAATTCGATGACAAGCTCCACCCAGGCGGCCCGTTCGACCCGCTCGGCCTCG
CCACCGACCCCTTCGGCAACAACCTGCTCACCGTCATCTCCGGCGCCGCCGAGAGGGTGC
CCAGCCTGTGAGCTGGCCGTTGATTGCCCGTCCGCCGCCGTCGGCTGTTGATGCTCAGCT
GCATGCGTGCGTGCGATGCAGCATGATGTGCTGTGTGAATTTTACCGGGGAAAAGTATGA
GAGTACGAATGTGCCGTACGTGTAAATTATCAAGGGCAGAAGAAACATGACCGTTCTGAT
TAAAAAAAAAAAAAAAAA



Homology of Contig U35_43185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None