barSeed - Barley Seed Development Database

Probe CUST_12437_PI390587928

Source Contig U35_43195

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12437_PI390587928	Hv_44K_v2	ACGCATCAAAGGACGCTCACACGAGAAACAGTTCGTCGGATTATTATTCACTACTAGACA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74367.1	1291	2e-24	1034 - 1093	100	60 / 60	minus	ABC04243 ABC04244 ABC08191
JLOC1	JLOC1_49554.1	1168	8e-25	874 - 933	100	60 / 60	minus
Harvest21	ABC04244	1914	3e-25	1855 - 1914	100	60 / 60	plus	ABC04244
Harvest21	ABC04243	991	3e-25	785 - 844	100	60 / 60	minus	ABC04243
Harvest35	U35_43195	406	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_14754	1370	3e-25	787 - 846	100	60 / 60	minus

Contig Sequence (406 bp)

>U35_43195 406 Hv_44K_v2
TGTCTAGTAGTGAATAATAATCCGACGAACTGTTTCTCGTGTGAGCGTCCTTTGATGCGT
CGTCATCGTGGAGAGGATTTTGTTTTCTTTCATTGAGCATTGCGTGATGTCCATGTGCTC
GATGGAATGACTTGAGTTTTGCAAGAACAAGTACGAGGGTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTACCACACCGGCCTGGATGGCTGTTTATTTCGCCCCAATTC
TCAGTACACCAATTGCCATCCCCATTAGGCACCTCCAGCAAGGGCTATTCTGTAGTATGA
TACAAGCACTTGCACATTACGGGGCTTTTCCTCCTCTGAATGAACTAAATCCCAGCAGGA
TCATATCGTCGCTAAAAATCGGGCTCGTGTGGTCTGAATGTAAAAA

Homology of Contig U35_43195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None