barSeed - Barley Seed Development Database

Probe CUST_12426_PI390587928

Source Contig U35_2108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12426_PI390587928	Hv_44K_v2	TGCTGAATGCTACTAGGGGTCTGAACTCGGGTTTATTGGAAGAAATCTTTGAATATCCTG	1562	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.366	1.364	1.124	0.906	0.404	0.422
Raw	17688.167	27043.867	19892.300	24894.877	3901.533	4451.447

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53947.7	6226	2e-24	2972 - 3031	100	60 / 60	plus	ABC05548 ABC12464
MLOC	MLOC_53947.3	4991	2e-24	3434 - 3493	100	60 / 60	plus	ABC05548 ABC12464
MLOC	MLOC_53947.4	4978	2e-24	3434 - 3493	100	60 / 60	plus	ABC05548 ABC12464
MLOC	MLOC_53947.6	3742	2e-24	2991 - 3050	100	60 / 60	plus	ABC05548 ABC12464
JLOC1	JLOC1_34695.1	1738	8e-25	1620 - 1679	100	60 / 60	plus
Harvest21	ABC05548	1643	3e-25	1563 - 1622	100	60 / 60	plus	ABC05548
Harvest35	U35_2108	1646	3e-25	1563 - 1622	100	60 / 60	plus

Contig Sequence (1646 bp)

>U35_2108 1646 Hv_44K_v2
ACCCCATCATCAACCTCTCTCGGTGTCTCCTCTCCCTAGTCCACCCCGCGCCTCGTTCAC
TCCGCCGCCGTCCCCTCCATTCCTCCGCCACCGCCAGCCCACCTGCATTCCACCAAAACC
CACCACGCCCTCTATAAATAAATACGCGCACGCATACACGCCACTACCACCACCGCCGCC
TCCCCAGCCCCCAGATCTCGACCCCCCATCTGCAATGGCGGCCGCATCGTCGCTCCACGT
CGCCGCCCCGGCCGCCACCCCGCGGGTGGGATCCGCCGGCCCCAAATCCGCATCAGCGGC
GAGGAGCGTGCGCGTGGCCAGATCGGGCGCGGGGGCGCGTCCCGGAGGCAGGCTGGTGGC
GTGCGCCGCCGTTGCAACCAAGGCTGATGCGCCGGCGAGCGAGGCGGCGTCCAAGTCTGA
AGGTCATGAGGTCTTGCTGTTCGAGGCTCTTCGCGAGGGTTTGATGGAAGAGATGCAAGC
AGATCCAACGGTGTGTGTCTTTGGTGAAGACGTCGGTCACTATGGTGGTTCTTACAAGGT
GACCAAGGGTTTGGCTGATATGTTTGGAGACCTTCGGGTTCTTGATACACCTATTGCTGA
GAATTCATTCACGGGCATGGGAGTTGGAGCAGGCATGAAGGGGCTGAGGCCTGTTATTGA
AGGCATGAACATGGGCTTCCTTCTCCTTGCTTACAACCAAATCTCAAACAACTGCGGCAT
GCTTCATTACACCTCTGGCGGCCAGTTCAAGATACCACTTGTGATCCGAGGTCCTGGTGG
TGTTGGTCGTCAGCTTGGTGCAGAGCATTCACAGCGTCTGGAGTCATACTTCCAGTCAAT
TCCTGGTCTCCAGATGGTTGCTTGCTCTACTCCTTACAATGCCAAGGGTTTAATGAAGGC
TGCGATAAGGAGCGAGAACCCTGTCGTGCTATTTGAGCATGTACTTCTGTACAACCTGAA
GGAGAAAATTCCTGATGAGGAGTATACGCTATGCCTGGAGGAGGCTGAGATGGTACGGCC
TGGTGAGCATGTGACTATCCTCACATACTCGCGAATGAGGTACCATGTGATGCAGGCTGC
AAAGACGCTGGTGAACAAAGGGTACGATCCAGAGGTGATTGACATAAGGTCGTTAAAGCC
ATTCGATCTGCACACAATAGGTAACTCCATCAAGAAGACCCACCGCGTGCTGATTGTGGA
GGAGTGCATGCGCACTGGCGGGATCGGCGCCAGTCTGAGGTCGGCCATCATCGACAACTT
CTGGGACTACCTCGACGCCCCCATCATGTGCCTGTCATCTCAGGATGTGCCGACCCCGTA
CGCCGCAACTTTGGAGGATGCGACAGTCGTGCAGCCTGCCCAGATTGTTGCCGCTGTCGA
GCAAATATGCCAATAGGGCATCATCTGTTTCAGCATCGTTAATTTGTATCTGCCCTGGCT
TGGAAGAACCTTTAATTTGTCATTTTTGCCTTGTAGCGAGGTGTTCATTGTGGTATAGGC
TTTGTATCCATTTTTTATTCCTGCTTGAGTTAACACTTCAGCTACATAACTGTACTGTAT
CATGCTGAATGCTACTAGGGGTCTGAACTCGGGTTTATTGGAAGAAATCTTTGAATATCC
TGGGCAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g44300.1	401	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi1g13777.1	395
Arabidopsis v10	AT1G30120.1	406	\| Symbols: PDH-E1 BETA \| pyruvate dehydrogenase E1 beta \| chr1:10584350-10586477 REVERSE LENGTH=406