barSeed - Barley Seed Development Database

Probe CUST_12406_PI390587928

Source Contig U35_2128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12406_PI390587928	Hv_44K_v2	TGCTGTCTGAAACCTGTGATGTTTTCTCCTCTATGTAAGATTGTCTGTTTGAATTCTGCG	1063	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.217	1.534	1.195	1.046	0.460	0.354
Raw	746.048	1456.614	993.203	1371.072	207.573	175.178

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370207	1108	2e-24	1033 - 1092	100	60 / 60	plus	ABC05682
JLOC1	JLOC1_25012.2	1194	8e-25	1079 - 1138	100	60 / 60	plus
JLOC1	JLOC1_25012.1	1904	8e-25	1789 - 1848	100	60 / 60	plus
Harvest21	ABC05682	842	3e-25	4 - 63	100	60 / 60	minus	ABC05682
Harvest35	U35_2128	1126	3e-25	1064 - 1123	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_2128 1126 Hv_44K_v2
CAAGAGCGCGCGGCTCCCCCCCTCCTCTCTCCACCGTCCCTCGCATTTCTTCGCCGATTC
CTCCTCGTCGCCCTCCCCTCCCCTGGCGACCTACCACCGCCTCGCCACCGCCGTGCCCTA
GCCCGGCCTCGCCCCCGGCGGCCTCGCGCTCCGGACCCTCGTTCCCTCCCCCGCATCTCA
CGCGCGTCCGCGTCCTGCGTCGTCGCGGCATCGCGCCCGCCCACCCTGTCCGATCCCGAG
CTTGTTTGAGCGTCCGTTCTTACAGTATGTCGGAGAAGCCATCTGATGATACGACTGGCC
AGGTGAGGCCTGAAGGAGATGTTTCTGATGTGAAAGTGGAAACTGCCAACCAGAATAAAG
GAAATGAGATGCCATCAGCACAGCAAGAGGAAGCAGTGATCAAGAAAAAGTATGGAGGAG
TACTGCCCAAAAAGTCACCACTCATATCCAAGGACCATGAGCGAGCTTACTTTGATTCTG
CTGATTGGGCTCTGGGAAAGCAAGGAGGACATCCTCAAAAGCCTAAAGGGCCGCTTGAAG
CACTTCGACCGAAATTACAGCCTACCCAGCAGCAAGCCCGTTCACGCCGATTCCTTCATG
CATCTACTGACAGCGAAGAGGGCGCCAACTCGCCCACGGAGGCTACGACCCCGAACCAGG
AGTCCACCGAGGAGGCCAAGGCAGCCGAGAACAAGGAATCCACCGAGTAGCTCCCATGTC
CTTTTTTGAACGGAACTCTGCCATTTGCTATGCCCATGCCGCCTCATTGCTCTAGCAATA
AGTATTCCGGACGTCGTGTAACGCCTGCTGAATTTTGAACTGAAGTGTCGCAGACATGCC
GTTATCCACCGTGCTATGCCATTCCATGGCTGTCGATGCCTGTAACGAATTCGGTATATG
GGACCGGGAACATTATGGTGTCGCACCGAGTGTTGTCCAGAGTCGGACAGAATAAAAGCG
TGAGAGCCTGAAATTTAAAAAAAAAAAAAAAAGTGCTGTGCTAGTTTCTCCTTCCTGCAG
TGCGGTGCAGCGCTGATGGTACCGTGCTGAACCGTCTGCTCCCTGCTGTCTGAAACCTGT
GATGTTTTCTCCTCTATGTAAGATTGTCTGTTTGAATTCTGCGTGG

Homology of Contig U35_2128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49160.2	141	1e-57	protein\|expressed protein
Brachypodium v1_2	Bradi2g16310.1	142	9e-67
Arabidopsis v10	None