barSeed - Barley Seed Development Database

Probe CUST_12405_PI390587928

Source Contig U35_2129

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12405_PI390587928	Hv_44K_v2	GACCATGTCATGGAACTGTGTTGATTTATACAAGTGTTATAAATAACTGCTTGTGTTGGT	1425	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.468	0.708	1.090	1.545	0.976	1.315
Raw	812.122	1968.919	2625.883	5742.063	1296.265	1890.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55796.1	2579	2e-24	1180 - 1239	100	60 / 60	plus	ABC05758 ABC38788
MLOC	MLOC_55795.2	1646	2e-24	1482 - 1541	100	60 / 60	plus	ABC05758 ABC38788
JLOC1	JLOC1_36030.1	1781	8e-25	1489 - 1548	100	60 / 60	plus
Harvest21	ABC05758	1490	4e-24	1410 - 1467	100	58 / 58	plus	ABC05758
Harvest35	U35_2129	1506	3e-25	1426 - 1485	100	60 / 60	plus

Contig Sequence (1506 bp)

>U35_2129 1506 Hv_44K_v2
GAGAGAACTAGTCTNGAGTTTTTTTTTTTGTATAGGAAATAAGCAATATTGGAGCGAAAA
ACCACCGGACTACTCCCGTGCGTGCCTGCCAAAAAAACCACGGCCAGTGACCAAACGAAG
ACGAAGGAAGGGAGATGCCGGGGCTCACGGCACCGTCGGACTACGCGGAGGAGCCGCCGC
GGCACCCGGACCTCAGGATCAACTCCAAGGAGCCATTTAATGCCGAGCCTCATCGATCTG
CGTTAGTTTCATCTTATATCACCCCAGTGGATTTCTTCTACAAGAGGAATCATGGACCAA
TTCCAAAAGTTGATGATATCTCAAGATACAGTGTTTCCATCAGTGGCCTCGTGAATAAGC
ATATCCAGCTGTCCATGGATGACATTAGGATGCTTCCGAAGTACAATGTCACTGCAACAT
TACAGTGTGCAGGCAATAAGAGAACTGCAATGAGTAAGGTACGGAAAGTGAGAGGTGTTG
GATGGGACATATCTGCTCTTGGAAATGCAACTTGGGGAGGAGCAAAATTATCTGATGTCC
TTGAACTAGTTGGAATACATAAACTCAGTTCAGTCACATCTTTGGGAGGCAAACACGTTG
AGTTTGTCAGTGTTGACAGGTGTAAAGAGGAGAAAGGTGGCCCCTATAAGGCATCAATTC
CACTAAAGCAGGCAACAGATCCTGATGCTGATGTGTTACTCGCATATGAAATGAATGGAG
AGACTATCAATCGTGACCATGGATATCCACTCCGTGTTGTTGTACCTGGTGTTATAGGCG
CACGCTCTGTAAAATGGCTTGACAGCATCAAAATAATCAAGGAAGAATGCCAGGGTTTCT
TTATGCAAAAAGATTACAAGATGTTCCCACCTACCGTAGATTGGGACAATATTAATTGGT
CGACTAGAAGACCACAAATGGATTTCCCTGTGCAGTCTGCTATTTGCACCCTGGAAGATG
TGGATGTTATCAAGGAAGGAAAGGCTAGAATTGCTGGTTATGCAGTCTCAGGTGGCGGCC
GCGGCATTGAGAGAGTAGATATATCTGTTGATGGGGGTAAAACATGGGTTGAGGCTCATA
GATATCAGAAAAGCAATGTGCCATACGTCTCTGATGGAGCTCAAAGCGACAAGTGGGCAT
GGGTTCTCTTCGAGGCTACATTGGACATACCACCAAATGCCGAGATATTAGCTAAGGCGG
TGGACTCGGCCGCAAACATCCAACCCGAAAAAGTGGAGGACATATGGAACCTGAGAGGAA
TCCTCAACACATCTTGGCATCGGATCAAAATACAAAATTCATCCTGCGTATCTAGATCCA
AAATGTGAAGCAAGTATGTTGATGTGCCTAGAACAATCAGCACGCTGGTCCATGATATCT
CCAAATAATAAGCTACTGCAGCTTAATTTCTGCGATTTCCATATAGACCATGTCATGGAA
CTGTGTTGATTTATACAAGTGTTATAAATAACTGCTTGTGTTGGTTAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_2129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g41830.1	398	protein\|sulfite oxidase, putative, expressed
Brachypodium v1_2	Bradi3g41170.1	398
Arabidopsis v10	AT3G01910.1	393	\| Symbols: SOX, AT-SO, AtSO \| sulfite oxidase \| chr3:314919-317274 REVERSE LENGTH=393