barSeed - Barley Seed Development Database

Probe CUST_12404_PI390587928

Source Contig U35_2130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12404_PI390587928	Hv_44K_v2	TCTGTAAGGGTTCATTTCTGTCAGGTCACCGATATCCGTAAGGGTTCATTTCTGTCCCTT	1583	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.129	0.982	1.494	1.180	0.391	0.417
Raw	2808.090	3943.413	5218.607	6503.943	743.842	865.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_17898.1	1527	8e-25	1250 - 1309	100	60 / 60	plus
Harvest21	ABC05378	1640	3e-25	1581 - 1640	100	60 / 60	plus	ABC05378
Harvest35	U35_2130	1643	3e-25	1584 - 1643	100	60 / 60	plus

Contig Sequence (1643 bp)

>U35_2130 1643 Hv_44K_v2
CACCACCCCCTCCTCGTGCCCTCCGCCGCCGCCGCAGCAGCCTCCGCCTCGGCCTCGAGG
CCTCCGCCGCTCCCCCCCGCGCGGCCAGGGCCCCAGAAGCTTCTGGAACACCCCGCCCCC
CGCCGCAATGCAGAGCGCGGCGGCCATCGGGCTCATCCGGCCATGCGCCGCGCGGCCCAT
CCTCAAGAGCCCCAGCCCCGGGGCCGCCCGCCTCCCGGCCTCCCGCGTGGCCCTCCGGCT
CTCCGCCGCGGCGCCCCGCGCGCGCCTCGTGGCCGCGGCGGGGCTCGGCCGCATCGGGCT
CGTGCCGGCGTCGCCCGAGCAGGAGAAGAGGAGCGGCGGCCTCGTGGCCGCCGCGGCCGC
CGGGAAGGCGGCGCCGGGCGAGGAGGCCGGGGAGGAAAGCGGAGCGGCGCTCGCCAAGAC
GCTCCAGCTCGGCGTCTTCTTCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTA
CAACAAACAGGTCCTCAAGGTTTTTCCTTATCCCATTAACATCACAACTGTTCAGTTTGC
TGTGGGAACTACGATTTCCTTGTTTATGTGGGCCACGGGTATCCTTAAAAGACCAAAGAT
TTCCGGTGCACAGCTTCTTGCTATCCTCCCTCTGGCTATTGTGCATACCATGGGCAATCT
TTTCACCAACATGAGCCTTGGGAAGGTTGCAGTGTCATTCACACATACAATCAAGGCCAT
GGAGCCTTTCTTCTCAGTTCTACTTTCTGCAATGTTCCTTGGCGAGCTGCCTACTCCTTG
GGTTGTTTTGTCTCTTCTTCCTATTGTTGGTGGTGTGGCATTGGCATCTATTTCTGAAGC
TTCTTTTAACTGGGCTGGATTTTTGAGTGCAATGGCTTCAAATGTGACCTTCCAGTCAAG
GAATGTCCTCAGCAAGAAGCTTATGCTGAAGAAAGAGGCATCTCTGGACAACATCAATCT
CTTCTCGATTATTACAGTCATGTCATTCTTCCTCTTAGCCCCTGTAACCTTGTTGACAGA
AGGTGTCAAGGTCACTCCTACTTTTCTGCAGTCTGCTGGTCTGAACCTACAGCAAGTGTA
CACAAGGTCTTTGATTGCGGCATTCTGTTTCCATGCATACCAACAGGTGTCATACATGAT
CCTCGCAAGGGTGTCACCAGTTACCCACTCGGTAGGTAACTGTGTCAAGCGTGTGGTGGT
CATTGTTACATCCGTTCTGTTCTTCAAGACCCCCGTGTCTCCAATCAACTCTATCGGAAC
CGCGATCGCTCTTGCGGGAGTTTTCCTGTACTCACAACTGAAGAGACTTCAGCCCAAGCC
CAAGGCTGCTTGATTGCATTCCGTTTGTCAGGATCAATAGAGCGTTGCCACACTCATGGA
ATCGGTGCTTTAGTTTAGCCGGACATATTGGGAAGCCTTGTTGAGTAACTAGTACCGCGA
AGGATCATTTGTAATTCAGTAATGAGCATTTTGACCAGGAAAGTTTTGGAATCTATTTCA
TGGTTCTCTACTTGGACGTTCTAGTTGCTACTTTAATAAAACCTCTGCAGTTTGATCGTG
CCAAAAAAAAAAAGTCACCGATATCTGTAAGGGTTCATTTCTGTCAGGTCACCGATATCC
GTAAGGGTTCATTTCTGTCCCTT

Homology of Contig U35_2130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12600.1	409	0.0	protein\|phosphate/phosphate translocator, putative, expressed
Brachypodium v1_2	Bradi4g27550.1	406	0.0
Arabidopsis v10	AT5G33320.1	408	2e-163	\| Symbols: CUE1, PPT, ARAPPT \| Glucose-6-phosphate/phosphate translocator-related \| chr5:12588950-12591408 FORWARD LENGTH=408