barSeed - Barley Seed Development Database

Probe CUST_123_PI390587928

Source Contig U35_4804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_123_PI390587928	Hv_44K_v2	ACATCGAAAAAGCAACGTGTATTACCACTAATTGCACCCGAGCTTGCACATAGTCGGAAA	1553	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.529	1.390	1.025	0.905	0.411	0.511
Raw	554.719	787.286	511.944	733.007	112.775	153.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363303	1822	7e-23	1750 - 1810	98	60 / 61	plus	ABC10592
JLOC1	JLOC1_15701.1	1666	4e-23	1519 - 1579	98	60 / 61	plus
Harvest21	ABC10592	1613	3e-25	1554 - 1613	100	60 / 60	plus	ABC10592
Harvest35	U35_4804	1613	3e-25	1554 - 1613	100	60 / 60	plus

Contig Sequence (1613 bp)

>U35_4804 1613 Hv_44K_v2
GGGAAGAGCGAGGCGGCTACGGTGCTCCGGCGCGTGCTACGCGGGGACGCCTCCAAGCGC
TCAGGGGGATCCATCAAGTCCCTTGTCTTCTCCCCCTCCGTACGCAACAAACGCGCTACC
TTCGCCCTCGTCTGCCAGACCCTCAAGTATCTTCCAATTCTTAAGGAGGTTTTAGCATCA
AGTGGATTATTCACCAGCAAATGGAAGAAACAAGAGGAATTAGTTTATGTGACGGCCTAC
GACATCCTCTTCGGCCAGGAGATTGTAGTTTCTGGATCTGTCGAGGAGTACATTATGCTA
CATAAAGATACTTTTAAGATTGCTCTTCAGAAAATATGTGTTAAAAGGAAAGTCAGTAAT
GTCGAGGATTTGTTAAGCGAGAAAACTACAGTCAAACCAAAGCCCAGGTTTGTTCGTGTA
AACACACTCAAGACCACAACAGGATCTGTTATTGAAGTACTAAGTAAAATGCACAAGGTT
GATAAAGATAATATAGTTCCAGACATGCTGGTGCTCCCGCCTGGAACTGATATGCATAAA
CATCCATTGGTCACAGATGGAAAGGTGTTATTGCAGGGAAAAGCAAGTTGTATGGTGGCA
GCTGCATTGAGCCCTCAGCCAGGTTGGAAGGTTATTGATGCATGTGCGGCTCCAGGGAAC
AAAACAGTCCACCTTGCTGCACTTATGAATGGAGAAGGGAGTATTATTGCTTGTGAACTT
AACAAAGAGAGGGCCAAGACATTGCAACATACTGTTAGAAAATCTGGAGCAAACAATATT
GAAACAGTTATTGGTGACTTTTTGAATATAGATAGCAATGATCCTTCATATGCAGAGGTT
CGTGCTATTCTATTAGATCCCTCTTGCTCTGGATCTGGAATCTCTACAGAGAGACTCGAC
CACTTGCTTCCTTCACATTCTATAGATGATCAGGGTGATGCAGGTTCAAGCGCAAGAATT
AGGAAACTGTCCGCCTTTCAGCGGAAAGCTCTCTCACATGCTCTATCATTTCCCTCGGTA
GAGAGATTGGTCTACAGCACATGTTCAATACACCAAGCAGAGAATGAGGACGTCGTCAGC
TCTGTGCTGCCTTTAGCTTCATCACTAGGTTTCGAGCTCTCTACCCCATTCCCTCAATGG
AGGCGCCGTGGCCTTCCAGTCTTCGACGGAGCCGAGCATTTGCTTCGGACAGACCCTGAG
GATGACCTCGAGGGATTCTTCATAGCGCTGTTTGTGAGGAAAGCAGCTGCGGCTGATGCT
TTGGAGCCTAGCAACACCGGTGGCGCGTTGCCAAGGAAAAGGAAACGAGCTTGCACAACG
CGAAGTGGAGGTCTCAGGGCATTCAGCTCCTTGAGATTGTCCAGGATGGACGTGCTCTGC
TCCATCTGGGGTCTTTAGAGACGTTTGCCCTAGGATCTTTGAGCGATTTCTTTTGGTAGC
CGCAGCTGAACGAAGCCGGCTTTGAACTTGTAACTGAATTTTGTGTTTCCCCGATCTGTA
GGCGGAATTATAAACTATAAGGCCATTGTGCACATTCAGTTTTGGAGCAATTAACATCGA
AAAAGCAACGTGTATTACCACTAATTGCACCCGAGCTTGCACATAGTCGGAAA

Homology of Contig U35_4804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12600.1	506	0.0	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi3g08100.1	505	0.0
Arabidopsis v10	AT5G26180.1	567	9e-175	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr5:9149253-9152595 FORWARD LENGTH=567