barSeed - Barley Seed Development Database

Probe CUST_12399_PI390587928

Source Contig U35_47045

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12399_PI390587928	Hv_44K_v2	AGAAACTTTCTGTGACCGGCATCGCTTATCGTTACTATCCATTCGAAACCGTCTATACTC	383	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.978	1.227	1.661	1.702	0.711	0.712
Raw	87.634	169.710	202.449	335.167	47.775	51.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373156	1393	2e-24	1051 - 1110	100	60 / 60	plus	None
MLOC	MLOC_55185.3	3262	2e-24	2119 - 2178	100	60 / 60	minus	None
MLOC	MLOC_55185.4	2043	2e-24	900 - 959	100	60 / 60	minus	None
MLOC	MLOC_55185.5	2916	2e-24	1800 - 1859	100	60 / 60	minus	None
MLOC	MLOC_55185.1	3300	2e-24	1826 - 1885	100	60 / 60	minus	None
MLOC	MLOC_55185.2	2671	2e-24	1197 - 1256	100	60 / 60	minus	None
JLOC1	JLOC1_35585.1	1520	8e-25	1062 - 1121	100	60 / 60	plus
Harvest21	ABC47828	593	3e-25	384 - 443	100	60 / 60	plus
Harvest35	U35_47045	593	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_47045 593 Hv_44K_v2
GGCCGGGGATTGCATTTATTGGTTGATTTCAGCATCGAATATCCTTGCGTTTGATTTGGA
TAGGGAGAGCCTAGCTGTGACATTGTTGCCAGCGCAGGTGCTCGCCAGCCGCAATCGCAA
TGTCGCGGTTATGCGGGCAGAGGGTGGTGGGATGGGTCTCCTCGTCGTTTCAGGCTTCAT
CGCCCAATTATGGAAGAGGGAGACAGACTGGCATGGCGTTGTTTCATGGATCCCTGGAAG
AACTATTGAACTGGACAAGTTATTTCTCCTAAATTCAGAGAAAGAGCCACCGAATATGTT
AGGTTATGCGGAGGAAAATAATGTGGCGTTCTTCTGGACAGTTCTTGGTGTCTTCATGGT
TCACCTGGAGTCATTGCAGCTCAAGAAACTTTCTGTGACCGGCATCGCTTATCGTTACTA
TCCATTCGAAACCGTCTATACTCCAGGCATTGGTGGTGGACACGAGGGAGCGGAAGTTGG
GAGGCATTTGTGGTGGACACGATGGAGACAGTACATAAGACGATTACTCAGTTAGATATG
ATATTGTGATGTACCGGTCGAGCAGGTCAGCGGGATGAGGCGTGGTGCATGTG

Homology of Contig U35_47045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g01972.1	411	4e-56
Arabidopsis v10	None