barSeed - Barley Seed Development Database

Probe CUST_12393_PI390587928

Source Contig U35_23092

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12393_PI390587928	Hv_44K_v2	GACGCTCAAATAGTGTAATATCATGTGTGGAACCGTTATGATCTCAAAATGAAGGAATGT	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68652.1	1578	2e-24	12 - 71	100	60 / 60	minus	None
JLOC1	JLOC1_45434.1	1645	8e-25	1428 - 1487	100	60 / 60	plus
Harvest21	ABC21327	511	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_23092	528	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_23092 528 Hv_44K_v2
TTGCATTTCATCTATACAGATTCATTGCCTGACTTTGATGATCTTGAAGGCGATGATAAC
TGTGAAATGATCCGGCATTTGCTGGTAGCTGCAGATAAGTATGCCATGGACAGGCTGAAG
CTTATGTGTCAAAACATCCTTGGCAAGAGTCTTGATGTGGAGAACGTGGCAACTACATTG
GCTTTAGCTGATCAGCATAACTGTGACAAGCTTAAAGATGTTTGCATTGAATTTATTGCC
TCTTCAGATAAGATGGATGATGTGGTGGCAAGCAAAGGTTATGCAAATCTCAAAAGATCT
TGCCCGTCTGTCTTGATAGATGCTTTAGAGAAGAGAAGTAGGCCTCGCATATCATAGAGC
AGCTCATGCGTACTAAAATCAGTTACATGCGGTTGTTGAGGTTTATTTATGTTATCTGCA
CCTTTCCTGAAGCTTTTCGACGCTCAAATAGTGTAATATCATGTGTGGAACCGTTATGAT
CTCAAAATGAAGGAATGTTACTACTTTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13000.1	366	4e-52	protein\|MBTB20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
Brachypodium v1_2	Bradi3g18250.1	259	7e-62
Arabidopsis v10	None