barSeed - Barley Seed Development Database

Probe CUST_12391_PI390587928

Source Contig U35_23095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12391_PI390587928	Hv_44K_v2	GCTAGTCAAGGGTAATTTCAGACTGATTTGTCTTGATAAGTTCTTCCCAATCAAATGTAT	846	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.010	0.989	1.393	1.275	0.540	0.475
Raw	285.271	436.693	549.766	759.249	115.713	111.330

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355147	1627	7e-23	1555 - 1614	98	59 / 60	plus	ABC37148
MLOC	MLOC_71412.1	1504	7e-23	226 - 285	98	59 / 60	minus	ABC37148
JLOC1	JLOC1_47461.1	1365	4e-23	104 - 163	98	59 / 60	minus
Harvest21	ABC37148	471	3e-25	30 - 89	100	60 / 60	minus	ABC37148
Harvest35	U35_23095	935	3e-25	847 - 906	100	60 / 60	plus

Contig Sequence (935 bp)

>U35_23095 935 Hv_44K_v2
CTCAACAACGCCCGCATCGTCGGCTACACCGCGCACGTCGGCGCCAAGACCAACCTCTCC
TTCATAACAGCAACATACTCCACCTCTGCGCGCGCCGCCCCGGCTGCTTCTGCCACCCCT
ACGGCAGCGGCGTCCCCGTCCTCCTCTACATCTGCCAGGCCGCGCACTTCCTCGACGTCG
CCGCCTGCAACGCCTCCTCCCTCGCCACCCACGACGCACCCATCTCCGTCACCGATCCCC
GCCTCGACGTCCTCTGCGCGCGCATCGTCAAGTACTACTCGCTCCGCCGCTTCGTCGCCG
AGACGGGCCGCGCCGTCGAGGAGTGGAACAGCGCGCACGACGCGGCGCTGTTCCACTACT
CGTCCGGGATGCAGGCCATCATGGTCGCGGTGGGGGTGTGCGACAGGGTGAGCGTGTTCG
GCTTCGGGAAGGTGGCAGACGCCAAGCACCATTACCACAGCAACCAGAAGAACGAGCTCG
ACCTCCACGACTACGAGGCGGAGTACGCCTTCTACCGCGACCTCGCCGAGCGCCCGCAGG
TAGTCCCCTTCCTCAAGGACACCGGCTTGGATGTCCCGCCCGTCGTTTTCTACCATTAGG
CGCCAGCTTCCTAGGGCGCGGGCAACGTGCTCGACGTTATGCTTTTCTTTTTGGACCTGC
TTGTTTGCTCACTGTAAAATGTGCTCTGCGAGGTGGGTTAGTAGTTATTTATTGTGATTA
GAGATGATGGATAGGTGAGTCGAGATAGAGAATTGGAGCTGCAAGTGTACATTAAGATTT
TGGATCCTCCATTGGTATAACCGTATAGGAGAGGTTGCTTGTGTTTTTGGCTGCTTCACA
ACGACAGCTAGTCAAGGGTAATTTCAGACTGATTTGTCTTGATAAGTTCTTCCCAATCAA
ATGTATACCAACTTAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63970.1	394	5e-110	protein\|sialyltransferase family domain containing protein, expressed
Brachypodium v1_2	Bradi2g55530.1	391	5e-116
Arabidopsis v10	AT1G08280.1	398	7e-69	Glycosyltransferase family 29 (sialyltransferase) family protein \| chr1:2608408-2609604 FORWARD LENGTH=398