barSeed - Barley Seed Development Database

Probe CUST_1237_PI390587928

Source Contig U35_28647

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1237_PI390587928	Hv_44K_v2	CATGAGAAGCAGATCTTCTCAGTAGAACTAGTACAAGCTTAATACTCAGGTTTCGATTTA	435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46081.1	668	2e-24	33 - 92	100	60 / 60	minus	ABC50849
JLOC1	JLOC1_29866.1	646	8e-25	33 - 92	100	60 / 60	minus
Harvest21	ABC27633	499	3e-25	436 - 495	100	60 / 60	plus
Harvest35	U35_28647	499	3e-25	436 - 495	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_28647 499 Hv_44K_v2
GAGAAAGATTGCTGCTGGTGTTCATGAGAAAAGGGGCTGTGATTACAAGATGAAAGGAAA
TCTCCATATGCTAGCGAGGGACGTGGGTAACAGACGCACGACCCACACTGGCCAGGCGAG
AGACCAAGTCATGTACGGCTTGGAGGTGTCTTCCAACAAGCAGTATTTTCCTTTCTTACT
TTTGTCGTTCTGTTTTCTATATCTGAACCTCTGAAATTAGTACGAGTGCGACAACCTTGC
AAAAAAAAAACTTAGTACAGGGATATTGTGTAGTTCCGATGTTTTGTTTCTGGTTGTCTT
CTGAAATTAGCACGTATGGCTTGCATACAAAATAGTACATAGCTGATTTAATCATTCACG
AATGGTGGCTTTCTTGCATTTTGACCGAATTTTCTATATATACCAGCAAGTTGGTTGGCT
GTTTGTTAAGATCTTCATGAGAAGCAGATCTTCTCAGTAGAACTAGTACAAGCTTAATAC
TCAGGTTTCGATTTAAATT

Homology of Contig U35_28647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None