barSeed - Barley Seed Development Database

Probe CUST_12373_PI390587928

Source Contig U35_47052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12373_PI390587928	Hv_44K_v2	ACTGCATTTTCTGGAAGGAAGAATTGAGAAGAGTCTCCGCATCATCAGAGGGAAGAAGAC	541	GeneList: yellow MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.635	2.194	0.952	0.974	0.539	0.482
Raw	38.691	48.977	18.380	34.785	4.572	4.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369282	1039	2e-24	514 - 573	100	60 / 60	plus	None
MLOC	MLOC_17059.2	870	2e-24	165 - 224	100	60 / 60	plus	None
MLOC	MLOC_17059.1	721	2e-23	180 - 237	100	58 / 58	plus	None
JLOC1	JLOC1_11781.2	988	8e-25	187 - 246	100	60 / 60	plus
JLOC1	JLOC1_11781.1	985	8e-25	187 - 246	100	60 / 60	plus
Harvest21	ABC47838	620	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_47052	620	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_47052 620 Hv_44K_v2
GGTTCCTTTCCTCTCCGGGCTACGCGGGCAGGGACCAGAAAGGGAAGCCGCGGCCGCGCC
GTCCCTCCCCACCCCTCTCCTCTCCCTAGGCATTTCTGCTGGTGATTGGCCCGTTTCCGA
CGGAGGAGAGTGGATCGGTCGAGTCGGGTCGAGCCTCGCCAGGGGCAGGAAGGATGGTGC
GGGGGAAGACGGAGATGAAGCGGATAGAGAACGCCACGAGCCGGCAGGTGACCTTCTCCA
AGCGCAGGAACGGGCTGCTCAAGAAGGCCTTCGAGCTCTCGGTGCTCTGCGACGCCGAGG
TCGGGCTCGTCGTCTTCTCCCCTCGCGGCAGGCTCTACGAGTTCGCCAGCGCCGACAGCT
TGCAGAAATCAATTGACAGATATAAGGCTTATACAAAGGATGATGTTAATAACAAGACAG
TACAGCCAGATTTGCAGCAAGTCAAAGCTGACGCTCTAAGCTTGGCAAAGAAACTTGAAG
CTCTTGAAGACTCGAAGCGAAAGATCTTGGGCGAAAATTTAGGAGGATGCTCTGCTGAAG
AACTGCATTTTCTGGAAGGAAGAATTGAGAAGAGTCTCCGCATCATCAGAGGGAAGAAGA
CCCAGCTGCTGGAGCAGCAG

Homology of Contig U35_47052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39130.1	234	8e-65	protein\|OsMADS56 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi3g32090.2	227	7e-69
Arabidopsis v10	AT2G45660.1	214	1e-51	\| Symbols: AGL20, SOC1, ATSOC1 \| AGAMOUS-like 20 \| chr2:18807799-18810193 REVERSE LENGTH=214