barSeed - Barley Seed Development Database

Probe CUST_12371_PI390587928

Source Contig U35_47054

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12371_PI390587928	Hv_44K_v2	ATGCTTACACTGAATCTCTTAATTTAGCCTGGAACTGTGTTGACGTTGAGAATATGGTAA	62	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4403.3	1079	2e-24	972 - 1031	100	60 / 60	plus	ABC47840
MLOC	MLOC_4403.1	7337	2e-24	7230 - 7289	100	60 / 60	plus	ABC38480 ABC47840
JLOC1	JLOC1_2733.1	856	8e-25	738 - 797	100	60 / 60	plus
Harvest21	ABC47840	520	3e-25	63 - 122	100	60 / 60	minus	ABC47840
Harvest35	U35_47054	520	3e-25	63 - 122	100	60 / 60	minus

Contig Sequence (520 bp)

>U35_47054 520 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACATACAATCTCATCACATATATATAAACTTAGTGTATTTTT
TTTTACCATATTCTCAACGTCAACACAGTTCCAGGCTAAATTAAGAGATTCAGTGTAAGC
ATTCAGAAGCTCCATCGGGCAACAGTTTTTCTGAATTCCAGGACATGGTAGGCAAAGCCT
ATTTGAGTTCCGTCGTATCTACATGTTTAACACACGGAAATACTTATCATCATTTCCTTC
TCTGAGGATCCCTACTAAGACCGTGTTTCCTCAAAGTTTTGATATAATTCCGCGACAGAC
TGAATTTGTTAGAACCCAGATGATGCAAGTAATCCCAAGTGAAGATCCCAGTCTTGTGCA
AATCATCAAACAGTATCCGGACTCCATAGTTTCCTATTGATTCAGCTGACATTATTCCAA
CATGTCGGCGCCCAAATATAACCTTCTCGCCAGCTATTGATCTGATCTTGCTGTCAGCTG
CTGGGCTGTAGACTCTGAGAAACTCAGCTGACAGATGGAA

Homology of Contig U35_47054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10430.1	142	3e-59	protein\|1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g57960.1	147	2e-59
Arabidopsis v10	None