barSeed - Barley Seed Development Database

Probe CUST_1235_PI390587928

Source Contig U35_28649

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1235_PI390587928	Hv_44K_v2	CGCGGATCTTGGACACTTCTCATACAGTGCAATCCAGCTTGCTTTCACTTCCTTAGTTTA	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251407.1	2765	2e-24	1063 - 1122	100	60 / 60	plus	None
MLOC	MLOC_76619.3	1188	2e-24	998 - 1057	100	60 / 60	plus	None
MLOC	MLOC_76619.1	1735	2e-24	1570 - 1629	100	60 / 60	plus	None
MLOC	MLOC_76619.2	1462	2e-24	1186 - 1245	100	60 / 60	plus	None
JLOC1	JLOC1_51096.2	1421	8e-25	1162 - 1221	100	60 / 60	plus
JLOC1	JLOC1_51096.1	1328	8e-25	1167 - 1226	100	60 / 60	plus
Harvest21	ABC27635	586	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_28649	586	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_28649 586 Hv_44K_v2
GCAGGACATTCGCACGAGGAGGAGCTCTCCCCTACAAGCTGGAGCGCAACCCTGAAACCG
TCGACAAGACCCGCGTCAAGGTGTGGCTCGAGAAGCACAAGAACCTGCACACCGCCCTCC
TCGTCATGGTTCTCATTGGAACCTGCATGGTCATTGGGGACGGTGTCCTCACGCCGGCTA
TATCTGTGTTTTCGGCTGTGTCAGGTCTTGAGTTCTCCTTGTCCAAAGATCACCATGAAT
ATGCCGTCATTCCAATAACATGCGTTATATTAGCATTTCTATTTGCCCTCCAGCATTTTG
GCACACATCGAGTCGGATTTATATTTGCCCCGATAGTTCTAGCCTGGCTATTCTGCATGA
GTGCTCTTGGTCTCTATAATATCATACATTGGAATCCTCATGTCTATCAAGCTCTGAATC
CCTATTACATGTTCAAATTCTTAAAGAAGACTAGGAAATATGGCTGGATGTCACTCGGTG
GAATTTTGCTCTGCATGACAGGATCTGAAGCAATGTTCGCGGATCTTGGACACTTCTCAT
ACAGTGCAATCCAGCTTGCTTTCACTTCCTTAGTTTACCCCGCGTT

Homology of Contig U35_28649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21890.1	794	4e-115	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi1g63100.1	787	4e-123
Arabidopsis v10	AT2G40540.1	794	9e-95	\| Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 \| potassium transporter 2 \| chr2:16931445-16934516 FORWARD LENGTH=794