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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12352_PI390587928Hv_44K_v2GTCATGCAATCCATTCGATCCCGTCAAATAAAATGGATAATAAATTTCGCCTTGTCAAAA907GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.4439.2343.0760.7800.0630.071
Raw 484.3952059.844569.515237.6755.3407.283



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_73045.13527e-23284 - 34010057 / 57plus ABC19270
Harvest21ABC192709803e-25908 - 96710060 / 60plusABC19270
Harvest35U35_99109803e-25908 - 96710060 / 60plus



Contig Sequence (980 bp)

>U35_9910 980 Hv_44K_v2
TGGATCCCCCGGNGCTGTTTGGTGCACTACACCACCACACTAGCTAGTGCCCTTGCTGAT
CCTTCCTCGGTACACGCCAATGGCCAGCGTCGTCGTCCTCGCTGCTGCCGCCGCTTGCTG
CTACATCCTCCTCGCGCCCTCGGTGTCGTCGGCGTCGTCCATGCCGGTGGTGTACAGCGT
CGGCAACGGGAGGGGGTGGGCCGTGCCGGCCGTCAACGGCACCGAGACGTACAACCACTG
GGCCAAGAGGAACCGCTTCCAAGTAGGCGACATCCTGGATTTCAAGTACGAGGCCAAGGA
CTCGGTGCTGCTGGTGAACCACGACGACTACAAGATGTGCAGCACGGTGACGCCCGTGAC
CCGGTTCGCGGACGGCGACACCAAGTTCAAGTTCGACCGGACGGGCTTCTTCTACTTCGT
CAGCGGCGTGCCGGGGCACTGCGAGGCGGGCCAGCGGATGATGGTGAGGGTCGTCGGGCA
CTCCTCGCTGGCCGCCGCTCCGGCCAAACCGCCCTCCGTCGGCGTCGGCGGCCGCGCGCC
CAGCCCCAGCCCCAGCCCCAGCCGGGCGGTCTGGTCCCCGGAATCCCCGTCGTCGTCCTA
CGGATCCAGTTCTGGCGGGTCCACCTCGGCGACCGGTTTCGGACCCAGCCCGTCGACCGA
GCCCAGTGGGGCGTCCAGGCGGGCTCTCTCCATTGTCACAGGGCTTGTTGCCGGTGTTGT
CACCATCATCGCGTTGGCGTGATCTTACTTGGAAGAGGAGGGAGGTTAATTACTGTAGGC
TATCGATCGTTAGGTCTGTGTCATCGGTTTAGGGAGGGATTAATGTTAGTCTTGAGATCC
ATAGGTGATGGTAGGGAGGACAATCTGTTATGGAGTCTTAGGTGAATTACTCAGGCGAGA
CCTTGGTGTCATGCAATCCATTCGATCCCGTCAAATAAAATGGATAATAAATTTCGCCTT
GTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_9910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None