barSeed - Barley Seed Development Database

Probe CUST_12347_PI390587928

Source Contig U35_47062

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12347_PI390587928	Hv_44K_v2	GTGAGCTGCGAGAGATCATGCTTATGTTCTCTGTAATATGTTAATGATTTCAAGTGTTTA	9	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.849	3.510	1.245	0.682	0.128	0.158
Raw	169.254	353.816	101.835	91.684	4.177	7.244

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251918.1	973	2e-24	887 - 946	100	60 / 60	plus	ABC10440
MLOC	AK377023	1739	2e-24	1563 - 1622	100	60 / 60	plus	None
MLOC	MLOC_50459.1	1447	2e-24	1287 - 1346	100	60 / 60	plus	None
JLOC1	JLOC1_32197.1	1488	8e-25	1288 - 1347	100	60 / 60	plus
Harvest21	ABC47852	620	3e-25	10 - 69	100	60 / 60	minus
Harvest35	U35_47062	620	3e-25	10 - 69	100	60 / 60	minus

Contig Sequence (620 bp)

>U35_47062 620 Hv_44K_v2
GGTCAGAACTAAACACTTGAAATCATTAACATATTACAGAGAACATAAGCATGATCTCTC
GCAGCTCACAAGTAGCGTTGAATTTCTGATAGGTGTGCAACTAAGATTCTCCGAAATATG
TAAGAACATATGTCCTTTCAAACAGAATTGCATCAGCCAAAAGAACAAGCCCAGAATGGT
CACATAATTTCCCTAAATAAGAGCTCTTGTCTCACAGGTGCCACCTTCAACCCTGTTGTT
GGTCAAATTTAAGGAGTCGGAGATAAGTTAACTGTCACGTTTCCGTTTGTCTAGCACTCT
AGCATTTGTCTACACGAACCAGCATGTCTGCCAAAGTCTTCCTTTTGCAATCGGCCTTGT
TGCTTGAAAGGGTTCCTGGAGAAGGGGGGATATGGCTTGTGGCAAGCCATGTTGGGAGCA
CGCACGGAACAAGAGAACTAGATCGGAGCAGCTTTTCAAAGAAGATTTCGTTTGGAAGGG
AACTCCTCCAAATCTCCTTCCTCTTAGCCAGGTCCATGGCAATAACAGTGCCACCATGTT
GGATGTAGACAAGGTTGGCTTGGAATGGATCTATGGCAGCAATTTCGACCAGGCAACGGT
CGCGCCGAACTGTAATTTTA

Homology of Contig U35_47062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None