barSeed - Barley Seed Development Database

Probe CUST_12344_PI390587928

Source Contig U35_9915

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12344_PI390587928	Hv_44K_v2	TCGCACTCTTATACCGATTGTTCATACAGATTTCATGAATATCCAGATACGAGAAACTTC	437	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.402	0.915	1.043	1.936	1.344	0.955
Raw	2.945	17.211	18.073	51.897	13.464	9.719

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30573.1	324	2e-24	69 - 128	100	60 / 60	minus	None
Harvest35	U35_9915	510	3e-25	438 - 497	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_9915 510 Hv_44K_v2
TGGCTCTGTTTATTCAGTTCACTCCGACACAAGCACGGAAATTATTGGTATAATACGATA
GACAAACAACTTAACAAAAATAAACGAATTGATAGTTTATTTATCCGAGTCCTCTTTTTT
TCCAACAGAAACAGAATAGGCAAAAACTCCTTATCCAAACAACCTAATCCTAACCATACA
CGATACTACTCATCTAGCTAGCCTTCAAAGCGTGTATATATAAGATGGACTCAATCTACT
ATTGACTATTTTTGAGCGGCCGCTGGGGACTGCAAGCTATGCCTAGAGGCCGCCATTAGT
AAGCTGCTGGCGAGAGGGTGCGCCAAGGAGGGAGGGATGGTGTTAGGCGGAAGCTGCAGC
TTGAGATATGAGCTGTATCCTATCTTTGATTCCTAGGTGGTGGTACCTTCAATTTGTTGT
TAAAATGTATAAAGGTTTCGCACTCTTATACCGATTGTTCATACAGATTTCATGAATATC
CAGATACGAGAAACTTCAGTTTATGTTTGT

Homology of Contig U35_9915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None