barSeed - Barley Seed Development Database

Probe CUST_12342_PI390587928

Source Contig U35_9916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12342_PI390587928	Hv_44K_v2	TGCAGGCTGCAGCTCCCCCCGCTCGTGGCTCGTGACGGGAAGAGGAAACATAAAATAATA	184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68598.3	1399	7e-23	195 - 254	98	59 / 60	plus	ABC12444
MLOC	MLOC_68598.1	3251	7e-23	619 - 678	98	59 / 60	plus	ABC12444
MLOC	MLOC_68598.4	2161	7e-23	180 - 239	98	59 / 60	plus	ABC12444
MLOC	MLOC_68598.2	2944	7e-23	449 - 508	98	59 / 60	plus	ABC12444
JLOC1	JLOC1_45396.2	3025	4e-23	479 - 538	98	59 / 60	plus
JLOC1	JLOC1_45396.1	3053	4e-23	479 - 538	98	59 / 60	plus
Harvest35	U35_9916	726	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_9916 726 Hv_44K_v2
GTCCTCTCTCCCGCTGCCCATCCCCCACCCGTGCCGCGTCCGTTGGCATCAATGGCGACG
CCTCGTTAGGTGGCGCGTCGCTCTTCCTTAACTGCTCCCCCCTCACACACGCGCATCAGA
TTCAGACGACTCTGCTTTGAGTTGGTGCGCTCGCTCCTCCTCCTCCCACCACCCCCTCCT
TCCCTGCAGGCTGCAGCTCCCCCCGCTCGTGGCTCGTGACGGGAAGAGGAAACATAAAAT
AATACCGCGCCGACCGCGGCGAGGCGTCGGCCGAGCTACACCTGTCGCCGCAGGAGCTGG
AAGATCTCCGTTTATATACCCACACCGGCCGGGGATGAGTGAGCCGGGCAACGAGCTGGA
GGAGCTGCTCTGGGACAACGGACCGGCGCTCCGGCGGGCGGCATCCCCCTTCCCGCCCTT
CTCCTGCAGCGCCGCCGGCACTGCGAAGCCGCAGGAGCTCGCCAAGCACCCCGCGATGGC
GCAGGGACACGACGACGACGCCGTGCCGTGGTTGCAACATTACCCCATCATCGGCGTGGA
CGACGACGGCGGCGGCGCCGACACGACCCCGATCCCCCAGGAGTACTTCTCCACCTTGTT
TCCCGTGTTCTCCGACCTCACCGCTGCGGTGGCGAGCAGAGATGCCGGAGCGCCATCGAC
GTCTCACGCGGCGGTGGCCGTGGAGCCGCTACCGGAGCCCCTGCGCCCCCAGCAGCACAG
CAGCAG

Homology of Contig U35_9916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None