barSeed - Barley Seed Development Database

Probe CUST_1233_PI390587928

Source Contig U35_30961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1233_PI390587928	Hv_44K_v2	GCAATTCTACATAGCAGTAGCACTATGGTATTCTTTTTGTGTGGCAATGTTAATATGATG	395	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.031	1.853	1.951	0.966	0.218	0.207
Raw	1019.411	2831.684	2553.117	2048.791	154.774	163.974

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4875.4	1628	2e-24	1470 - 1529	100	60 / 60	plus	ABC31095
MLOC	MLOC_4875.6	1319	2e-24	1239 - 1298	100	60 / 60	plus	ABC31095
MLOC	MLOC_4875.2	1866	2e-24	1696 - 1755	100	60 / 60	plus	ABC31095
JLOC1	JLOC1_3093.1	1660	8e-25	1509 - 1568	100	60 / 60	plus
Harvest21	ABC31095	562	3e-25	396 - 455	100	60 / 60	plus	ABC31095
Harvest35	U35_30961	562	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_30961 562 Hv_44K_v2
GCCAACTCGTCGCCGAGACGGTCGCGGTCCCCGAGCCCGAGCCCGGACGACATGCCGATC
CTGGGCACCGTGGGGGCTTACTGGAATTGCAGCGACGGCAAGGGAGGCCATGACGGCTCG
GTGACGAGAGGCGGGTTCATGAAGACCAGGAGCAGATTTGGGCAGGTGAGCTCTTAGCTT
GAGCGAATTGAGCTTTGGTCGATGCATTTCCAGGCTCCAAATGTGCGGTGCTCATGATGT
TGGCATGATGAAAATGGCGAATTGGGTTGCTCCTGAATTATGAAAATAGGCTAGAAAGAG
CTGTGAATTAAGAGAGAAGATACTGTGTGAGTGGGTGATTGTTGTTCCATGGGAGGAAGA
GCTTTCTATTCTTTTATGTGTTTGTAAACATGTCAGCAATTCTACATAGCAGTAGCACTA
TGGTATTCTTTTTGTGTGGCAATGTTAATATGATGTATTATTATTATAAGTCTTTGTAGG
TTTAGCATTATTGTATTATTATTTCTCCCTTTGTCAATAATAATCAATATGATGTGCTAC
TTACTGCAAAAAAAAAAAAAAA

Homology of Contig U35_30961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None