barSeed - Barley Seed Development Database

Probe CUST_12339_PI390587928

Source Contig U35_9918

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12339_PI390587928	Hv_44K_v2	AGAATGAAGCTTTATGCGGAATCATTGGCACGCTTCCAAGGTGGATCACCTTACATCTAC	672	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11868.1	1776	2e-24	860 - 919	100	60 / 60	plus	ABC17153
JLOC1	JLOC1_7911.1	1848	8e-25	882 - 941	100	60 / 60	plus
Harvest21	ABC18691	772	3e-25	673 - 732	100	60 / 60	plus
Harvest35	U35_9918	772	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_9918 772 Hv_44K_v2
GGGGTGGAGGAGGATCCGGCAGATCGGAGAGGAAGAAGGGTTTGTCCGGGAGCGATGGAT
GAGGAGTACGACGTGATCGTGCTGGGGACGGGGCTCAAGGAGTGCATCCTCAGCGGCATC
CTCTCCGTCGATGGCCTCAAGGTTCTTCACATGGACAGGAATGACTACTACGGTGGAGAA
TCCACATCCCTGAATCTGGCCAAGATCTGGAAGAGATTCAAAGGCAGTGACACCACTCCT
GACCATCTGGGTGTCAGCAAGGAGTACAATGTCGACATGGTGCCCAAGTTCATGATGGCC
AACGGTGCATTGGTCCGTGTTTTGATCCGCACAAGCGTCACAAAGTATCTCAACTTCAAG
GCTGTCGATGGCAGCTTCGTGTACAACAACGGGAAGATCCACAAAGTCCCTGCGACAGAT
GTCGAAGCCTTGAAATCTAACCTAATGGGCCTTTTTGAAAAGCGCCGCGCTAGGAAGTTC
TTCATTTACGTTCAGGACTACGAAGAGGATGACCCAAAGTCACACGAAGGCCTGAATCTG
CACAAAGTCACGACCAGGGAACTCATCTCCAAATATGGACTGGAGGACGACACAGTTGAC
TTTATTGGTCATGCATTGGCACTTCACCGGGATGACAACTATCTGGATGAGCCTGCAATT
GACACTGTCAAGAGAATGAAGCTTTATGCGGAATCATTGGCACGCTTCCAAGGTGGATCA
CCTTACATCTACCCCTTGTATGGGCTAGGAGAGCTCCCTCAGGCCTTTGCTC

Homology of Contig U35_9918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16900.1	448	6e-164	protein\|rab GDP dissociation inhibitor alpha, putative, expressed
Brachypodium v1_2	Bradi1g66490.1	448	8e-168
Arabidopsis v10	AT5G09550.1	445	5e-147	GDP dissociation inhibitor family protein / Rab GTPase activator family protein \| chr5:2963850-2966465 FORWARD LENGTH=445