barSeed - Barley Seed Development Database

Probe CUST_12325_PI390587928

Source Contig U35_9921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12325_PI390587928	Hv_44K_v2	TAAATGGTATTCTGGGATGTCCAGGAATGATATAAAGATCCAATGCCCGGTTTGCCGTGG	533	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.949	1.047	1.831	1.576	0.839	0.724
Raw	158.581	241.739	417.564	543.006	105.117	99.608

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71715.3	2348	2e-24	1416 - 1475	100	60 / 60	plus	ABC19552
MLOC	MLOC_71715.2	1964	2e-24	1428 - 1487	100	60 / 60	plus	ABC19552
MLOC	MLOC_71715.1	2544	2e-24	1460 - 1519	100	60 / 60	plus	ABC19552
JLOC1	JLOC1_47678.1	2642	8e-25	1421 - 1480	100	60 / 60	plus
Harvest21	ABC21791	606	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_9921	607	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_9921 607 Hv_44K_v2
GGCGATTCTCCTCCGCCACTGCCGGATAACCTCCGGTGCCGCAGAAGTGATGGTAAGAAG
TGGCGCTGCTCAGCTCGTGCACTCCCCACTGTCAGCTTTTGCGAGTATCATTATGCCAAG
GCTAGCAAGGGCAAGAAACCGCCAGCCGATGGGGAGGTCCTTGCCGTGGCTCTCCAACGG
CAAAAGAAGAACAAGAGAAAGGGAAGAAAGCGCTTAAATCTGGCGCCAGAATCACCAAAG
GCCACAAGGGATCTCCCTAATGGATTGATGACAATTTCACCGGGGAGCAGTGGGCCGCTA
GGCTCCCCTGTGACTACAAAGGTTGGAGTGGATATTCCCGCACCACTCCGGCGGTGCTAC
CGTTCCAAGAATGCTGAGCCAGTGCCTGTTGGCCCTGTGAAGGTCGTTCCTCATGCAATG
AGTAAAGCAAAGGCAGCACAGATGTCATGCCACCGTTGTGGGTTGAAGAAGGTAGCACGC
GTTGTCAAGTGCAAGAACTGTGAAAACAAGTACTTCTGCAACAGCTGCATCAATAAATGG
TATTCTGGGATGTCCAGGAATGATATAAAGATCCAATGCCCGGTTTGCCGTGGCTGCTGT
GATTGCA

Homology of Contig U35_9921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37140.1	694	1e-85	protein\|expressed protein
Brachypodium v1_2	Bradi1g24940.1	667	8e-91
Arabidopsis v10	None