barSeed - Barley Seed Development Database

Probe CUST_12324_PI390587928

Source Contig U35_47070

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12324_PI390587928	Hv_44K_v2	TATGATACACTACACCCAGTCCTCCTCCTCGGTTGTTGTTCAGAATTCTTCAAATGCCAA	523	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69770.3	1818	2e-24	1069 - 1128	100	60 / 60	minus	ABC47862
MLOC	MLOC_69770.2	1971	2e-24	1324 - 1383	100	60 / 60	minus	ABC47862
MLOC	MLOC_69770.1	2008	2e-24	1269 - 1328	100	60 / 60	minus	ABC47862
JLOC1	JLOC1_46253.1	1936	8e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC47861	649	3e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_47070	649	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_47070 649 Hv_44K_v2
TCGAGATCTAGGATTCTACGGTACCGTTGCTAGCCATGGCGCCGCCGAAGCCGAGCTCTC
CTCCCAACCCCAACCCCTACCCCAGCCCCGCCTCCGACGCCGACAAGGCCAAGGGCAAGA
TGAAGGTGACGCCCCTGCAGGTCGCCTTCCTCGTCGAGCGCTACCTCGCCGACAATGGCT
TCGCGGCCTCCCTCGCCGCCTTCCGCTCCGACGCCGCCCACCTCTTCGCCAAGACCAGCA
ACAACATAGTCCCCCCCAAGGGCCTCCTCCCTCTCGCCGACATCCTCCACGACTACATCT
CCCTCAAGGAGTCACGCCTCGCCGTCGACTCCGCCATGCAGGCCATGCAGACCCTCGTCT
CCACCTACTACCATCCCGGCTCATCCACACATCTCGCGGCGGCGCCCTCCTCACCACCGC
TCGTCCCGCCCTTCTTCGTCGGCCCCACCACCTCTTCTCCTCCACACCCACCTATGGTGG
CCATCCCCCCGCCTCCTACAGGCTCCTCTGGATATGTTACGCCTATGATACACTACACCC
AGTCCTCCTCCTCGGTTGTTGTTCAGAATTCTTCAAATGCCAACAGCATGTCCACCCCAG
CAGCCAGTTCTTTGCCTACAAAAAAAAGAAAGGCAGCCAAGCCTGCTGC

Homology of Contig U35_47070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None