barSeed - Barley Seed Development Database

Probe CUST_12322_PI390587928

Source Contig U35_9923

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12322_PI390587928	Hv_44K_v2	AAACTCTTGAACTATATTTGGATAAATATAAAGATTTGCATCCGAGGCTGCCTGTCATTG	1008	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.047	1.284	1.861	1.408	0.659	0.706
Raw	86.971	173.515	210.297	258.247	40.354	48.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5606.1	2915	2e-24	2213 - 2272	100	60 / 60	plus	ABC22995
MLOC	MLOC_5606.2	2920	2e-24	2128 - 2187	100	60 / 60	plus	ABC22995
JLOC1	JLOC1_3620.1	2961	8e-25	1907 - 1966	100	60 / 60	plus
Harvest21	ABC20551	1096	3e-25	1009 - 1068	100	60 / 60	plus
Harvest35	U35_9923	1096	3e-25	1009 - 1068	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_9923 1096 Hv_44K_v2
GGGACAATGGAAGTGAAGTCGAGGATCTCCCAGAGACTATAGCGATGATTAAAGGACGAC
TATGGGCCAATGTATTCAAGTACAGCTTGGATTTGAAAAACTTTCGAGATGCATATTGTG
CTATAATCTCAAATCCAGATGATGATAGCAAGTATGTCTGCTTGAGGCGTTTCATCATAG
TTCTTTGTGAACTTGGCGAGACTAAGGTCATTTGCAATGGTGAGATACCGTTCACTGGTT
TGGTGGAAAAAGTGGAGCAAGAGCTCTTCTGGAAGGCTGAGCGCTCAGATCTATCTTCTA
AACCAAATCTATACAAAGTCCTTTATTCATTTGAAGCTTATAGGAACAATTGGAGGAAGG
CGGCTGCATACATGTACAGGTATTTTGTTAGATTGAGCAGAGAGGGGGATGCAGGTGGAA
GCCGCCAACTCACTCACGTATTACAAGAGAAGCTGCATGCTTTGTCTACTGCTATCAACT
CGTTGCAACTTGTTGAACCCTCATGTGCCTGGCTCGATTCGGTTTGTGAAGCTGATGATC
ATATTTCACCAAGCAAAAAGCCTCGTAATCTTTTGATGCAGAACTCTGCTTTTGGCACAG
ATTCAGAAATCTCTACATTGCAGTTTTGTGTTGACATTGAAATTCTTGAAAAGGAATACA
CACTAACAGAAGCACTTTATATGCTTAGCACTGTAAATCCTAAATCCAATTTTTCTGAAA
GCTATTCTATCGAAGCCTTGACGGACATTCTTGTAAATGAGAATTTCTATGACCTGGCAT
TCACCATCGTGCTGAAATTTTGGAAGGAGTCAGGAATGAAAAGAGAACTGGAGCGTCTCT
TTGCAGCTATTGCACAGCAATGCTGCCCAAACAGAGTAGGGAACTCAGGGAGAAACCTGC
CTGACACTCAACAGCTGCTACTTCTGCCTTCTTCCGAGGATGATGGATGGGATGGCAATA
GCAAGACTATTGCTGTGGCCCATCAAGTGCAGGGAAGTTGCCAGTGGGAAACTCTTGAAC
TATATTTGGATAAATATAAAGATTTGCATCCGAGGCTGCCTGTCATTGNTGCTGAAACAC
TTCTTTACACTGATCC

Homology of Contig U35_9923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04970.1	1505	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g03637.1	1523	0.0
Arabidopsis v10	AT1G33410.1	1504	5e-90	\| Symbols: SAR1, NUP160, ATNUP160 \| SUPPRESSOR OF AUXIN RESISTANCE1 \| chr1:12109769-12118828 REVERSE LENGTH=1504