barSeed - Barley Seed Development Database

Probe CUST_12320_PI390587928

Source Contig U35_47073

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12320_PI390587928	Hv_44K_v2	TGTTTAATCAGGTGTGAGGAATGCACTGGACTGAGGAGAAACTGTTTCTATGCTAAAAAA	11	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.331	2.949	1.541	0.713	0.186	0.153
Raw	347.941	537.645	229.426	162.833	15.438	13.350

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47121.1	930	5e-22	817 - 871	100	55 / 55	plus
Harvest35	U35_47073	626	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (626 bp)

>U35_47073 626 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCATAGAAACAGTTTCTCCTCAGTCCAGTGCATTCCTCACAC
CTGATTAAACAAATCACACCTGATTAAACCAATCCGCCGGCAACCATTTGGCTCCGCAAA
TCCACACCGCTAGTCAACCAAGAACGTCCGTGGCACCACCACTCTCCTAGCCTAGGCAGT
ACACGCGCGCGCCCACACACACCAAAGAAATGAAGGCACGGGGAAATCCAAACAAACGAG
CTCCAGATCAGGTCCGCTAGACCAGCCTGAGGAGCGAGGCGAGGACGGCGACGGCGGCGT
GGAGGGCGACCCCGGCGCGCGGCCCGGCGAGCGCGGCGGAGCGGTGGTGCTGGGCGGAGG
GCGGCGGGGACGGCGGCGGCAGGTTCTGGGACTTGATGGCGAGGCGCATCCCGCCGGGGC
AGTAGCCGAAGCTGCAGATGAAGTAGTAGGTCTTGGTCTCGTTGAGCTCGAAGGCGAAGC
TGCGGCCCTTGCTGTAGTTGTAGATGGCGTTGCTGGCGTCGCACCGGTTGTACCCGGACT
CGTTCACCTCCCACACGTCCGNCTGCCCCGCCGTGTAGTAGAACACGAGCCAGTCGCCCT
TGTAGAAGGGGCCGTGCTCCTGCTCC

Homology of Contig U35_47073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g08030.1	165	7e-54
Arabidopsis v10	None