barSeed - Barley Seed Development Database

Probe CUST_12310_PI390587928

Source Contig U35_47078

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12310_PI390587928	Hv_44K_v2	ATGTTGAAAAGCACAAGCCAGTGTACATTCATGGAACCAATAAGACCTGCACCTTCTCCG	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58711.2	1531	2e-24	466 - 525	100	60 / 60	plus	None
MLOC	MLOC_58711.1	1386	2e-24	807 - 866	100	60 / 60	minus	None
MLOC	MLOC_58711.3	1671	2e-24	894 - 953	100	60 / 60	minus	None
JLOC1	JLOC1_38164.2	3642	8e-25	2458 - 2517	100	60 / 60	plus
Harvest21	ABC47876	640	3e-25	446 - 505	100	60 / 60	plus
Harvest35	U35_47078	640	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_47078 640 Hv_44K_v2
GCTCACCGACGAGCCGCCGGCGGCGGCGCAAACTCTGTTTACGGCGAGGAGCCACGCGGG
CGGGGGCGGCGCAGCGACTGGAGCGACGGTGACTCCGCGCGGGACGCGACCAGATCCCTC
ATGTCGTTCGCCGGCGTGTCCGTCGTCGACGGCGGAAAGCACTGCGCCTGCGACACCTCG
GCCGTCTACGCCGGCGCGGACAGCGGGTACCACCTGCTCATGGTCAGGGACTACTCGCGC
ACCAAGGTTGAGTTGCCCACCGGCGAGAGCGCCACCACCGGCCTTTTCACGGTGGGGGAA
TATGATTGGTACATCGAGTACTACCCCAACGGAGAGAACCCAGACTGCCGGGACTTCGTT
TCGCTCTACGTCACGAGGAATACCCTCTACGACGGCGAGGGCGAAGAGGATGTGGAGGCC
AAGTTCAGCTTTAGCCTCGTCGACCATGTTGAAAAGCACAAGCCAGTGTACATTCATGGA
ACCAATAAGACCTGCACCTTCTCCGGCAGTGCCCCCTCCTGGGGCAGCGACAAGTTTGTG
AGAAGAGACGTCCTGNAACGATCGCGGGACCTTAAGGGTGACTGTCTCACCATCCGGTGT
GATATCATGGTTGTTTGCAAGGATCCCAAAACCGAGGATG

Homology of Contig U35_47078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None