barSeed - Barley Seed Development Database

Probe CUST_12305_PI390587928

Source Contig U35_9932

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12305_PI390587928	Hv_44K_v2	TCGTATACACCCTCGTCTACCACATGATGGAGCCCCCCATGCAGTACTACGAGATCGTCG	72	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4058.1	1918	2e-24	643 - 702	100	60 / 60	plus	ABC12441
MLOC	MLOC_4058.5	3452	2e-24	830 - 889	100	60 / 60	plus	ABC12441 ABC19776
MLOC	MLOC_4058.3	3309	2e-24	854 - 913	100	60 / 60	plus	ABC12441 ABC19776
MLOC	MLOC_4058.4	2513	2e-24	987 - 1046	100	60 / 60	plus	ABC12441
JLOC1	JLOC1_2467.1	1438	8e-25	1151 - 1210	100	60 / 60	minus
JLOC1	JLOC1_2465.2	1384	8e-25	793 - 852	100	60 / 60	plus
JLOC1	JLOC1_2465.1	2067	8e-25	840 - 899	100	60 / 60	plus
Harvest21	ABC19077	451	3e-25	73 - 132	100	60 / 60	plus
Harvest35	U35_9932	450	3e-25	73 - 132	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_9932 450 Hv_44K_v2
GCCCCTTCGGCCCCGGCTGCCACCGCGAGGGCATCGCCTACGTCTCCTTCGCGCAGTGGG
TCGCCGTCCTCCTCGTATACACCCTCGTCTACCACATGATGGAGCCCCCCATGCAGTACT
ACGAGATCGTCGGCGAGGGCAACGAGATCGAGCGGGTGCCCGAGGAGGAGGAGACGCAGG
TCAGCAACTTCAGCCGCCCTCTGCTCCAGGAGGCCGAGTGGCCCGGGATGGCCGAGAAGG
TCATGGAGCACTCCAAGACGCCATTCATCGCCAGGATCTTCGCCAGCATCTCGGGCTCCT
CGCAGAACACCTTCCCCGACATTGATTTCTCCGAGGAGGGGGGGATCTCCGGCGCCGGCC
CTAGCAGCCCAAAGTCTCTCCGGTGTTTGGCGGAGCCCAAAGTGGTCAGGAGGATGAGGG
TTGTCGCCGAGAAGACTCCGATTCAGCATG

Homology of Contig U35_9932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09190.1	456	8e-83	protein\|auxin efflux carrier component, putative, expressed
Brachypodium v1_2	Bradi2g61980.3	453	2e-89
Arabidopsis v10	AT1G71090.1	457	1e-56	Auxin efflux carrier family protein \| chr1:26812551-26813924 FORWARD LENGTH=457