barSeed - Barley Seed Development Database

Probe CUST_122_PI390587928

Source Contig U35_4805

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_122_PI390587928	Hv_44K_v2	TCAACGGCACAAACAAGATCCGTGCTTATACACACTGCACAAAAGATTCGGAAGGGATCA	995	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358031	2047	2e-24	1422 - 1481	100	60 / 60	plus	ABC10851
MLOC	MLOC_70130.3	1608	2e-24	1218 - 1277	100	60 / 60	plus	ABC10851
MLOC	MLOC_70130.2	1741	2e-24	1218 - 1277	100	60 / 60	plus	ABC10851
MLOC	MLOC_70130.1	1749	2e-24	1125 - 1184	100	60 / 60	plus	ABC10851
JLOC1	JLOC1_46527.1	1764	8e-25	1116 - 1175	100	60 / 60	plus
Harvest21	ABC10851	1575	3e-25	996 - 1055	100	60 / 60	plus	ABC10851
Harvest35	U35_4805	1596	3e-25	996 - 1055	100	60 / 60	plus

Contig Sequence (1596 bp)

>U35_4805 1596 Hv_44K_v2
CGCCTGGGGCCGCGCCGGCCTCCTCAACCTGGACCTGTCCAGCAAGATCCTGCAGAACGC
CGTGAAAGCCTTCTCCCCTCTCCGGCTCCGGCTCGGCGGCTCCCTGCAGGACCTGGTGGT
CTATGGCACCGGAGACACCGGGGCGCCCTGCTCTCCCTTCACCAAGAACACGTCGGCCAT
GTTCGGGTTCACGCAGGGCTGCCTGCCGATGCACCGGTGGGACGAGCTCAACGCCTTCTT
CCAGGAATCCGGTGCACAGATTGTCTTTGGGCTGAATGCGCTGAATGGCCGGGTCCCAAT
GCCTGATGGCTCCATGGGAGGACCATGGGATTACACCAATGCTGCTTCTTTCATCCAATA
CACTGTCAGCAAGGGATATGATATCTATGGCTGGGAGCTTGGAAACGAACTCAGTGGCAG
TGGAGTTGGTACTCGGGTCGGTGCAGATCAGTATGCCGCGGATGTGATCAACCTGAACCA
AGTCGTTGACAAAGCCTACCAAGGATCGAAACCGCTGGTGATCGCGCCGGGAGGCTTCTT
CGATGCGGGTTGGTTCACCGAGCTCGTAGCCAAAACAAAGCCGAACCAGATGGATGTGAT
CACTCACCATATCTACAATTTAGGCCCCGGTGTTGACACGCATCTGGTTGAGAAAATTCT
CAACCCGTCTTACCTTGATAATATGGTAAGCACGTTCAGCAACCTTCAGGGGATACTGAA
GTCCGCAGGGACAGCCACCACCGCGTGGGTCGGCGAAGCTGGAGGGGCTTACAACAGTGG
CCACCACCTTGTAACTGATGCATTTGTGTTCAGTTTCTGGTACCTGGATCAACTCGGGAT
GTCCGCAAAGTACGACACAAAGAGTTACTGCAGGCAAACCTTGGTTGGAGGGAACTATGG
CCTGCTCAACACAACAACGTTTGAACCAAATCCTGATTACTACAGTGCTCTGCTGTGGCA
TCGCCTCATGGGAACCAAGGTTCTCTCCACGACATTCAACGGCACAAACAAGATCCGTGC
TTATACACACTGCACAAAAGATTCGGAAGGGATCACCCTACTCCTGATCAACCTCAGTGG
CAACAACACAAACCACATCTATGTGACCAGCGAGGGCGCACAAGAGGGCGCGCATCCCCA
CGGCGCAAAGGAGCACACAAGGTCCATTCCGAAGCTCGGCGAAACAGCTGGACTCACAAG
GCAGGAGTACCACCTCACCGCCAAAGATGGGAACCTGCAGAGCCAACACATGCTGCTCAA
TGGCAATGTGCTAGCCACTGGTGCCAATGGAGCCATCCCCAAGCTGGAGCCGGTGCAGGT
TGACGGAACACAGCCCATAACCCTGGGCCCTTACTCCATTGTGTTTGCTCATATTCCAGA
CTTTAATGCTCCTGCCTGTAGGTAGATTGTTGATTGGTTTTTGTGGGAAATTATCCCGTT
ATCGTAGGTTAGAGTAAGTGCCGGTGGGTGAGAAGCAAAGCATGCTCACCTGCAAATGAA
GTAAGCTGTAAGGCTGAAATATTTGTGATTTATCATTGTTTTCATGAAATGAAATGTCAA
GAAAGCTTGTGTGTGCAAAAAAAAAAATAAGAAAAA

Homology of Contig U35_4805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g55870.1	542	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g54370.1	542
Arabidopsis v10	AT5G34940.2	536	\| Symbols: AtGUS3, GUS3 \| glucuronidase 3 \| chr5:13235912-13238718 REVERSE LENGTH=536