barSeed - Barley Seed Development Database

Probe CUST_12298_PI390587928

Source Contig U35_9936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12298_PI390587928	Hv_44K_v2	ACTTCTTGATAGCATACTTGCTTGGAGTGCTTCCGAAGGAATATACTATCACATGTTTAG	586	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357674	1281	2e-24	646 - 705	100	60 / 60	plus	ABC24540
MLOC	MLOC_21341.1	1991	2e-24	1302 - 1361	100	60 / 60	minus	None
MLOC	MLOC_21341.2	1999	2e-24	1302 - 1361	100	60 / 60	minus	None
MLOC	MLOC_21341.3	1297	2e-24	600 - 659	100	60 / 60	minus	None
MLOC	MLOC_21341.4	1268	2e-24	597 - 656	100	60 / 60	minus	None
JLOC1	JLOC1_14814.5	1239	8e-25	563 - 622	100	60 / 60	plus
JLOC1	JLOC1_14814.4	1247	8e-25	571 - 630	100	60 / 60	plus
JLOC1	JLOC1_14814.3	1113	8e-25	325 - 384	100	60 / 60	plus
JLOC1	JLOC1_14814.2	1703	8e-25	325 - 384	100	60 / 60	plus
JLOC1	JLOC1_14814.1	1711	8e-25	333 - 392	100	60 / 60	plus
Harvest21	ABC20440	649	3e-25	587 - 646	100	60 / 60	plus
Harvest35	U35_9936	649	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_9936 649 Hv_44K_v2
GAAGATGATACTGGGAGGGCCGACCTGCCGCGGCTTCACCCAGCTGCATCCCCCCGCCGC
CGCCCGGGCTGCCAGGCTGCGCTTGCGGCCGGCTCGCGCCGCGAACACCTCCTCCGAGCC
GGCGGCCGCGCGTCTGAGGGCGGTGCTCGAGCAGGTGGACGACGAGCTGCGGAAGGGGAA
CGACGAGGCCGCGCTGTCACTGGTGCGCGGCTCACAGGGGGAGGGCGGCGGGCTCCGGTG
CTTTGGCGCCGCGAGGCAGGTACCTCAAAGGCTTTATAAACTAGATGAGCTTAAGCTAAA
TGGGATCGATACTTCTTCTTTCCTATCTCCTGTGGATCAGACTTTGGGATCAATTGAGAG
AAATCTCCAAATTGCCGCGCTTCTTGGAGGGCTTTCTGTTTCAGTTGCATTTGAGCTTTC
TCAACTCCAAGCACTGCTTATCTTTGTAGGCCTACTGTTCGTGTGGTCTGTTGATTTGCT
TTCTAGATATATTACAATGGAGGGGCGAGAAACTTGGTTCTCGACACAATTGCTCACAGT
CTCAGCGAGAAGTACCACAACAGAGTTATTGAGCATGAAGCTGGTCACTTCTTGATAGCA
TACTTGCTTGGAGTGCTTCCGAAGGAATATACTATCACATGTTTAGATA

Homology of Contig U35_9936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g28540.1	347	4e-74	protein\|stress regulated protein, putative, expressed
Brachypodium v1_2	Bradi2g13210.1	341	2e-77
Arabidopsis v10	AT5G27290.1	341	2e-52	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:9618590-9620473 REVERSE LENGTH=341