barSeed - Barley Seed Development Database

Probe CUST_12295_PI390587928

Source Contig U35_9938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12295_PI390587928	Hv_44K_v2	CTAGGAGTATTAATTTCTCCATCGTGATGGTTATCCTCTCTGACAGTTGACTCAGCCAAA	677	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45441.1	659	2e-23	572 - 629	100	58 / 58	plus	ABC25561
MLOC	MLOC_45441.2	513	3e-22	458 - 513	100	56 / 56	plus	ABC25561
JLOC1	JLOC1_29505.1	727	1e-23	570 - 627	100	58 / 58	plus
Harvest21	ABC23261	756	3e-25	678 - 737	100	60 / 60	plus
Harvest35	U35_9938	756	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_9938 756 Hv_44K_v2
GAGCGGCGGGACGTGACGCTGGCGGACTGGGTGGTGTCCAAGATCCAGATCGGCGAGCTC
CGGGAGGTGGTCGACCCGCCGGTGCTCGACGAGCTCCCCGACGTGATGCCCAGCGTGGAG
GCGGTGGCGGAGCTGGCGTTCCGGTGCGTGGCGCCGGACAAGGACGACCGGCCCGACGCC
CGGGAGGCGCTGGCCGAGCTGAGGAGGATCCAGGGGATGCTCCCTCAGCTATCAAACCAC
AAGGATTCCTCTTGACTTTGGTTTCCACGGATCAGAATTGTGCTAGCACTGCACAATCTC
TCGGTTTGCTGATGGCCGTGTTCCAAATTCCAATGCCGACTTCCTGGCTGAAGGATTTGC
ATCAGCCTCTGCATGCATTTGTCGAAGACGAGTGCCTCATTGTGGATGACCGGATAGCAA
ATCTGTTCAGACAAGGTTGTGATCCGAGGTACGTGTGAGGTTATAGATATACTGAGATCA
ATCAACGGTAGGAGGATACTGTGACTGTAATATGAGCTTACTTGTGTTGGTTCTGTGAGC
TCCTCTGCCTTTTGCGTTTGGCAGTGGCTTGTGATCAAGATGAACACCTGTAAGTTGGTT
CTGTAGTCAAGAAACTGATGTTATGTTAGGTACGTATGAGACAGGCATCCCACAATTGGG
TTGTTGTTATATCGCAACTAGGAGTATTAATTTCTCCATCGTGATGGTTATCCTCTCTGA
CAGTTGACTCAGCCAAAAAAAAAAAAANNNAAAAAA

Homology of Contig U35_9938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None