barSeed - Barley Seed Development Database

Probe CUST_12289_PI390587928

Source Contig U35_47090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12289_PI390587928	Hv_44K_v2	GAAACAAATGTCGATGGCCTTGTTCTTCACCACCAGGAAATACAGTCATCATCTCGTGCA	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38901.3	1646	2e-24	1122 - 1181	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.1	1896	2e-24	1263 - 1322	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.4	1972	2e-24	1307 - 1366	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.2	2854	2e-24	2221 - 2280	100	60 / 60	plus	ABC43772
JLOC1	JLOC1_25333.4	1865	8e-25	1188 - 1247	100	60 / 60	plus
JLOC1	JLOC1_25333.3	1999	8e-25	1322 - 1381	100	60 / 60	plus
JLOC1	JLOC1_25333.2	1932	8e-25	1255 - 1314	100	60 / 60	plus
JLOC1	JLOC1_25333.1	1807	8e-25	1130 - 1189	100	60 / 60	plus
Harvest35	U35_47090	650	3e-25	386 - 445	100	60 / 60	minus

Contig Sequence (650 bp)

>U35_47090 650 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCTTCAGTAGACATGGTATTCAATTACTGAAAGGAACACATC
AAAAAGTTCGGTTCCCTTTTCTCTCACTTCTACATAGCATTGCACTTCGTCGGACCACCA
TCACCATCACCACCAATGGTAGTATGAATTAATTACTGAAGTGCTTTCAGTTTAACAAAA
AGCACACACAATAAATCCGTTGATCAGGATAACCCAACACATAAATGTGATCACCTTCCC
TTTGGATGGCTGGTTGTTGAAATATCGCCGAAAAAATAACTCCGGTTGAATCTACAGGGG
TCAATGAGAACACAAAACTTGACCATCGGCCTTGGTGGCTGGGATATTAAAAACGCCAGC
CGTTTCTCTCTGGGTGAAACCATGTTGCACGAGATGATGACTGTATTTCCTGGTGGTGAA
GAACAAGGCCATCGACATTTGTTTCCAAATCATTCAGACTGCAGCGGCTCTTTCACAAGC
TTTATAGTANAGCGTCTTCTGCACATAGAAGAGCATATAAGCCTGAGAACTTCTGACAGT
ATGCTCATCAACTCTGGTTACCCATGCATCATCACATCTGTACCACTGATTGTTTAACCT
CAGATATGTCACATAGTGGCCAGCATCTAGTTTACCACTATGTGTGATCA

Homology of Contig U35_47090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None