barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12287_PI390587928Hv_44K_v2TAAAATTAACCAGTGGCGGGTGGGTGCTTTATATTTGCAGAGGCAACTGCATGTGGAAGT295GeneList: white
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0341.4731.6661.3060.7190.666
Raw 239.113549.337514.733637.961121.705126.516



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55982.255272e-2487 - 14610060 / 60minus ABC10334 ABC21143
Harvest35U35_470917223e-25296 - 35510060 / 60minus



Contig Sequence (722 bp)

>U35_47091 722 Hv_44K_v2
TTTTTTTTTTTTTTTTTNTGTTTGAAGATGCCAAGGAGCATTACCGTTCCATCTCCAAAC
CCATACGCTCCTGGCAAAAACAGAAGAAGCAAGCCTGGCAGGTACAAAACTCTAGCAAAG
CAACTGCTCAAGCTGAGGAAAACTGGTTCCAGGAAAGTATGAATATGGTTAACATTTACA
GCAATTACAGCCATGTTTCATTCCTCCCACAATCCCATGTCGTCACAGACATGAATCCAT
GTGTGAGTTGTATATCCCAGCCCACCAGGGTCACCCAGGTGCAATACAACGCCTCACTTC
CACATGCAGTTGCCTCTGCAAATATAAAGCACCCACCCGCCACTGGTTAATTTTAACCCA
ACAAGAAAACAGGGTCTGGTCTTTAAAGTTGGATTTCTAGGTACAAACAAGCTCACCAGA
CAAAAGAAGTCGATGCGAGGTCTCGCCAAAGTTCCTACTGCCATGACAATTGCTTGTATG
ATGATCTTTCAGGATCCCAACTGCCCTCGGGTTCCTTCCTCTTTATTCCTACACCAGGCA
ATTGGTACATTCTCGTTTGCTCCTCCACAAAGGCCTGCGGCGGCGTCATCAAAGTTTGTC
TAACCGATGAAAGTATCCGTTCGTCCTTCCCTTCTAAATCTATACTCCCCAGGACAGAAT
TAAAGATCAACCCTCCTCCTGGTCTTTTCCATTTCCAGTTACTGTCGAGTCCATCACTGC
TG



Homology of Contig U35_47091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None