barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12286_PI390587928Hv_44K_v2AGACCCTCTTTGTTTTAGGATTTCGCTACAAACCGAACTTCATGTTTTTAACCCAAAAAA952GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2111.8471.9050.8030.2430.234
Raw 35.95488.34479.86052.6714.3685.118



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_41807.118566e-211652 - 170410053 / 53plus
Harvest35U35_994310233e-25953 - 101210060 / 60plus



Contig Sequence (1023 bp)

>U35_9943 1023 Hv_44K_v2
GGGCTGCAGGGNCCGCCGCCTCAACGTGTCCGACCCCAACCGGGTCGCCGTCGGCCAGGA
GCTCTGGGTGCCGCTGCCCTGCAGCTGCGACCCCGTCGGAGGGGAGGCCGTCGTGCACCT
CACCTACGTCGCGCCTGCCGGGAGCTCCGTCGCCGGGATTGCGGAGGAGTATGGCACCAC
GGAGGAGACGATTCTGGCGCTCAACCGCATGCCCGACGCCAAGAGCCTCCTCGCCGGCCA
GGTCCTCGACGTGCCGCTCCGAGCTTGCTCTTCTGCCATTAGCAGCACGGCCATCGACCG
CAACCTCCGCGTCCCAAACGCAAGCTACATCCTCACGGCCAACAACTGCATCATGTGCGG
CTGCAGCTCCACCACTTGGCAGCTGGACTGCCAGCCGACGCAAGGGTTGACATCCAACTG
CCCGGCGGCGAAGTGCGGAGACCTGTTCCTGGGGAACACGTCGACGTCGGCGACCTCTAC
CTGCGAGAGCACGACGTGCTCCTATGCCGGCTACACCAATGGCACCTCGTTCTCCATCCT
CTCCAATCTCACCGCCAGCTCCGTGTGCAACGCTGCTGGGATATCACCCGCCGCACAGCC
GTCACACTCCTCGGCGTCCAGATTGGGGTCGCCGGCGCGGTGGTGGGAGCTGATCGCCGG
GTTCCATGTCGCTCTACTGTGCCTCGGGTTTCTGCGCCGTGATTGAGTAGCAACTCAGAT
TCTTGTCGCTGGACGTGTAGATCGTAATTCTGCAATGTGAGTAATTTGGGACGCGCTGCA
TGTGTGGCATCGGTTTGCAGCTGGTCGGATGTGTTAGAAGGCAGACGTGAGGGGGAACAC
TTGTTCTATGTTAGAAGGTTAGATCAGATCGGGATAGATTTGTAGTGCCGAGCAGCATTT
CCAGCGTTTCTGGTTTTAGCCTGGTATATTGTCACTGTCTTGCTATAAATGGAGACCCTC
TTTGTTTTAGGATTTCGCTACAAACCGAACTTCATGTTTTTAACCCAAAAAAAAAAAAAA
AAA



Homology of Contig U35_9943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g37600.13746e-102protein|lysM domain-containing GPI-anchored protein precursor, putative, expressed
Brachypodium v1_2Bradi4g37090.13741e-95
Arabidopsis v10None