barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12283_PI390587928Hv_44K_v2TATGTATTCATCTATGCGCATTCTGCATGATGTTTTTTGCGAGAGTAGGGGTATTTATTC626GeneList: sienna3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 14.9777.1402.3050.2040.1870.145
Raw 653.120489.205131.97918.1634.6723.827



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_38796893e-25627 - 68610060 / 60plus



Contig Sequence (689 bp)

>U35_3879 689 Hv_44K_v2
GGGGACACATTGCCAGAAGATTAAACAACGAAAGGATAGAATAAACCGATAGATCAACCA
TGCCGTCTTGCAAACGGACCACAAGTGTTCCGTGCTTGGTAGCTGTGATGGTCATGGTGG
TGGTTACAGTGATGCTGTCTTGCGATGCCTACACTTTTTGCGATGACATTATTGGAAAAT
GCACCATGGTGAACTGCAAGGCTCTATGCATTAAACAAGGTTTCGGGAAAGAACGTATCC
ATTGCGCAACTGAAGATAAATGTTGTTGTGATTATGGCCCGAAGTCTAAGCCCATGGTCG
ACATTGTAGACCGCGATTGATGGTATATTGCATATGTTGACAATAATAAATAAAGTACAA
AAAATGTATTGCTACCTCAAAAAAAAAAAAAAAAGGTGGCACATACATCTATGTTGCCAA
ATAAACCAATATAATAGAAATTACATATCACAAACAATATATCATTAAAAATTTCAGATC
ATATAATTGTATAATGGTATAATCTCGAGACTATACAACTCATTTTGTGTTGGTTAAATT
ATATATCTAGGGATACGTGGAAGGCTTATAAACCAGAAAAGTGGTAGTATTAGATGACTC
TGGTACGTGACAGATGATATGTATATTATGTATTCATCTATGCGCATTCTGCATGATGTT
TTTTGCGAGAGTAGGGGTATTTATTCCTT



Homology of Contig U35_3879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None