barSeed - Barley Seed Development Database

Probe CUST_12280_PI390587928

Source Contig U35_3882

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12280_PI390587928	Hv_44K_v2	CATAATTCTATCATTCGGCATGGCTATTATTGTTTTGATCAGACAGGTCGTGTCAAAAAA	2012	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.867	1.663	1.152	0.875	0.361	0.384
Raw	1051.815	1464.682	891.404	1062.235	152.658	179.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354271	2364	3e-22	2240 - 2295	100	56 / 56	plus	ABC10549
JLOC1	JLOC1_24354.1	1435	1e-22	1304 - 1359	100	56 / 56	plus
Harvest21	ABC10549	2083	3e-25	2013 - 2072	100	60 / 60	plus	ABC10549
Harvest35	U35_3882	2083	3e-25	2013 - 2072	100	60 / 60	plus

Contig Sequence (2083 bp)

>U35_3882 2083 Hv_44K_v2
CCGCAGCTGCCCTTCATTTTATCACGTCTCCCCGCTCCCCCCCAACCCCACCGCCGGCAT
CCCCTTCTACGGCGACAACTGGCGCAACCCGGCCGCCGCCTCCGGCCCGGCCGCCTCCTC
GCTCCTCCCCGCCGTCGTCGGCGTCGGCCCCTTCCCCGACCGCCACCGCGCGGCCGCCTT
CTCCGCCGCCCGCAGCGCCGCCGACCTCAAGGAGACCTTCGCCGCGTGGATGACGGAGCA
GCACTGGGAGGACATGAAGCAGCTCTTCGAGCTCTGGGTCCGCTCCCTCGACGCCGCCAC
CGGCAAGCCCAACCGCCCCGACGTCGACCTCTTCAACCACTACCTCCGCGCCAACCTCAT
GTCCGGCGCCCTGCCGCACGAGATGCTCGACCTCGCCGACCAGATGCGCGAGTTCCACAT
CGTGCCCAACACCGCCTCCTACAACCTCGTCCTCAAGACCATGGTCAAGGCCCGCGAGGT
CCAAGGGGCAGAGAAACTCGTCGAAAGGATGCTGCAAACAGGAATTGTACCAGATGATGA
GTCCTACAATTTGGTTGTAGATCTGCTTCTTAAACACAACCGTGCTGACTCAGCCTTCAA
ATATTTGGAATTGATGCTTAAATCAGGCTACGCGGTATCTTCACCTGTATTTGCTGAGTA
TGTCAGAGTGTGTGTTAAATCTGGGAGATTGGACACATTGGCATCAATCATAGAGAAATG
CAAGGCAACAGAGAAGAACAAAGTCTTGTGCCCACAATGGGCCTGGTGCATTGACATAGC
AGAAGCTGCTTTTGAAGCTAACAATAGCAAGCTAGGCATGTTTGGCTTGGAATTTCTTGC
GAGATGGATTGCACATGGCGAGGGTTCTAAACCCCCTACTCACCGTTCAGTCGATGAAGG
TTTAGTACTCTCAGCTTTCAGTGCTGCTGGTAGAACCTGCAGCAGTGACCTCTTGAACGC
TGCTTGGTCAATATTACGCAAGTCCTTGCGCCAGAAAAGGGCACCCATGCCAGAAACTTA
TCTCGCAAAGATTTATGCTCATTCATCAATTGGTCAACTCCAACGAGCTTTTGGGACTCT
TCGTGAATTTGAAAATGCCTATAGGAACTTTGAGGGTATCGATAAGGAGCTCTTCTCACC
ATTTACTTCATTGCAACCACTTGTTGTTGCTTGCTGCAAGGATGGCTTCACCACATTGGA
CTCGGTTTATGTTCAATTAGAGAATCTGAGTACCGCGGATCCACCATACAAATCTGTTGC
TGCTCTTAACTGTGTTATACTAGGCTGTGCAAATATTTGGGATCTTGAGCGAGCATACGA
AACTTTTGAGGCAATGAAAGAAAAGTTTGGGCTTACACCTGACATACATTCGTACAATGC
CCTGTTGCATGCATTCGGGAAGCTAAAAAAGACAGAGGAAGCTAGTAATGTATTCCAGCA
TTTAGTAAGCCTTGATGATGTCAAGCCAAATGCAACAACATACTCTCTGCTTGTCGATGC
GCATCTTGTCAACCGAGATCCTAAAGCTGCTCTTGCTGTTCTTGATGAAATGGTTGATGT
GGGCTTCACTCCTTCAAAGGAGACTCTTAAGAAAGTCCGAAGACGCTGCTCCCGTGAATC
AGACTTCGATAGTGACGAGAAGCTGCAATCCCTGTGTAAACGGTTGAATTTACGGATGGG
CGGCGAGGGCCGCAGGGAGATGCTGTATAACATCGAATACAGTGCCGAGTACTGAAGCAT
TTGATTTTGATGACGCCGGTGTTCTTTCCAATCCTAGTAGGCACGGCAAGTGTACTGTTT
GCCGGCACTCGAAGAGCACAGAGGCTGTAGTCTGTAAAGTATACTTTGTAACAGTTTTCC
TAATCATTCTTCAGTATCCCAGGCTTTCTTTTTTCGCTGGAGAGACAGGACGAAATTTAT
TTGTTAGGATTTCAGAATAAGGTCCTAGTACATTTGTTTCTCTGCTCATCAAAGCACTAT
CTTCCACAATCAGAGGATGTTCATTAGCTTATCATAATTCTATCATTCGGCATGGCTATT
ATTGTTTTGATCAGACAGGTCGTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g40800.1	624	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g22510.2	619
Arabidopsis v10	AT1G26460.1	630	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:9151816-9154407 FORWARD LENGTH=630