barSeed - Barley Seed Development Database

Probe CUST_12273_PI390587928

Source Contig U35_3890

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12273_PI390587928	Hv_44K_v2	TTCTGGCACCTGCTTTCCTGTTTATCTATTTTCGACGAACATTAATAGTCAAAAGAAACT	1505	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.757	1.775	1.038	0.812	0.269	0.297
Raw	824.662	1273.348	668.473	833.005	97.525	115.796

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360603	1572	2e-24	1509 - 1568	100	60 / 60	plus	ABC09253
JLOC1	JLOC1_45889.2	1997	8e-25	1864 - 1923	100	60 / 60	plus
JLOC1	JLOC1_45889.1	1327	8e-25	1194 - 1253	100	60 / 60	plus
Harvest21	ABC09253	1558	3e-25	1478 - 1537	100	60 / 60	plus	ABC09253
Harvest35	U35_3890	1586	3e-25	1506 - 1565	100	60 / 60	plus

Contig Sequence (1586 bp)

>U35_3890 1586 Hv_44K_v2
CAACACCACACCGACCAGAGGGGGGGGGATTCCCGATCAAACCCTCGAATCCTCGGCGAA
ATCCCACCCACCGGATCGGGACATCCGACGCCCCGGCCGCCTCCCTCTCTCTCTCTCTCT
CTCGCATGGAGCGCGTCTTCTCCGTCGAGGAGATCCCCGACCCGTTCTGGGGCCAGCCGT
CGCCGCGGCAGCGCGGGCGCCGGCCGCCGGAGGGCGCCATGAACCGGTGCCCGTCCGAGT
GGTACTTCCAGAAGTTCCTCGAGGAGGCCGTGCTCGACAGCCCCGCCGCCGACCCTAGCC
CGATGTCCGGTGCTAGCGGACGAGGTCAAGCGGCCTGCCGTCCGCGTGGCGTGGCGGTGA
CGGCGACGGGCGCGGCGGTGGACCCGGTGGAGTACAACGCCATGCTCAAGCAGAAGCTCG
AGAAGGACCTCGCCGCCGTCGCCATGTGGAGGGCCTCTGGTGCCATGCCTCCAGAACGTT
TTGCAGCTAGTCCGTCATTGCCAAATGCAGATGTTCAGCATATAGGCACTATTAATCCCA
TAGGAGGTAATGTGGTTCCACTTCAAAACAAGCTAGCTGGTGGCGCAAGCGGGGTGTCGG
GTCCACATCTGGTACAAAATGCTGATGCCCTTGTAAAGCAAGCCGCTAGCTCTTCTTCGC
GGGAGCAGTCAGAAGATGATGATATGGAAGGAGAAGATGAGATCACTGGGAATGGGGTCC
CTACTGATCAAAGACTGCGGAGAAGGAAGCAATCCAATCGGGAATCGGCCAGGCGTTCAA
GAAGCAGAAAGGCAGCTCACCTGAATGAACTCGAAGCACAGGTATCACAGTTAAGAGTTG
AAAACTCCTCGCTGTTAAGGCGGCTTGCTGATGTTAATCAGAAATACAATGGTGCTGCTG
TTGACAATAGGGTGTTAAAGGCGGATGTTGAAACCTTAAGAGCAAAGGTGAAGATGGCCG
AGGACTCGGTGAAGCGGGTGACAGGCATGAGCGCTCTGTTCCCTGCAGGGTCCGACATGT
CATCTCTCAGCATGCCCTTCACTGGCTCTCCATCAGAAGCCACCTCCGACGCTGCCGTCC
CGGACGACCTGAGCGCTTACTTCTCCACAAGCGAGGCTGGTGGTAACAACGGATACATGC
CCGAGATGGCTTCCTCGGCTCAAGAGGATGACAACTTCCTCAACGAGACCATGGATACCA
GCAAGATGGGCAGACCCGACTCGCTGCATCGTGTGGCGAGCCTGGAGCACCTCCAGAAGA
GGATGTGCGGCGGGCCAGCTTCGTCCGGATCGACCTCGTAGGAGCGGCCACCTCCTCGGG
GCCATGAAGTCCAAGAAACTATTGTTGGGCAGACGTATCTTGGTGGTGGATGTTGATAAT
CCTATGCTATTTGTTCATTGGCTGTGACCTCTAGTGTCCTCGTCGCTATGTTTCTGGAAC
ACAGCAGATTTAGTAAAACTGTGCGTTGTCATTGCTGCCGGGTGAATACTTTGGATGGAT
GTGGTTTCTGGCACCTGCTTTCCTGTTTATCTATTTTCGACGAACATTAATAGTCAAAAG
AAACTTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58250.1	426	5e-156	protein\|bZIP transcription factor domain containing protein, expressed
Brachypodium v1_2	Bradi1g05480.1	421	2e-178
Arabidopsis v10	None