barSeed - Barley Seed Development Database

Probe CUST_12270_PI390587928

Source Contig U35_3893

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12270_PI390587928	Hv_44K_v2	CGTGTCTTGTCGTCGAGTTTAACCGGTGGTTATGATAAATTTATGAACCTTTTGAAAAAA	1906	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.431	2.187	1.241	0.734	0.230	0.290
Raw	2595.920	6218.073	3061.767	2988.279	308.821	430.876

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34453.1	1055	9e-22	9 - 63	100	55 / 55	minus	ABC09380
JLOC1	JLOC1_22215.1	1079	5e-22	979 - 1033	100	55 / 55	plus
Harvest21	ABC09380	1252	1e-23	1183 - 1242	98	59 / 60	plus	ABC09380
Harvest35	U35_3893	1977	3e-25	1907 - 1966	100	60 / 60	plus

Contig Sequence (1977 bp)

>U35_3893 1977 Hv_44K_v2
GGAGATAAGCGAAATCCCCAAATTTCTCCCCCTCCCTCTCCCCCTCTCCTCCCGTTTGAG
AGAGCGCCCCCCGAGCTCCGTCTTCCCCGCGCGCAGTGCGAGTGCGCAGCCGACGCCGGG
AGCTCGGCTTCGTCGTTCCCTGCTTTCTTGTTTCCTGATTTATCTTTCTTTGTCTTTTTT
TGTCCGTATTTTCCCGGTATTATCCCGATTCGCGGTGATTTCTTGGTGATTTTGCCGCGT
CCTCGCTCCGGCGGGGGATCTGTGATTTCTGCGCTCTGGTTTCCCGAATCCTCCCGCCGG
GGCTTGGATTACCAACCACTCCGCATTATTTTTCCATTTCGTCCCGGCTTTCTTTTCATT
TTCCCTCATTTTTCCCGTCATTTGCGGCCTCGTCCCACTCGTCCCGAGACACCGAGAGCT
CTGTTCGTCGGCAAAGATTTCGAGCTCTGTGCGGCGTGGGGTTTATGGTTTTCTTATAGC
CGCTGAGCTTGCTTGTTCTGGGTAGCAGTCTTTTTGAGGAATGATGGAGGTGAGGGCGTC
GCCGGAGCAGCAGGGGGGGATGGCCGGGAGGGAGCCGTTCGGGCTGCCCAACAGCCCGCC
CACACCGCAGTCCTCCGGCCCCGTGCCGAGCATGCGCATGACCTACGGCGAGGACGGCAA
CGCCTACTTCCTTAAGCCGGGCTCAGCTCCGCCGCCGGCGGAGGCCTACCAGCCAGTGGG
AGGCGCTGGGCTCGACATGCCCGTCGGCCCCGACGCGGCTGCTGGTCGGGGCAATGGCGG
GCCGCCGTTCGAGCTCAACATGGAGGAGGAGGCCGCCAAGAAGCGCGGCCGCGCAATGAA
GTTCAGCGACGACGGCTCCACGTCGCTGGCATTGGTGCCTGTGCCGGTGCCCGGGGAGCC
GACGGCGGTGGCGCCCGGTGATTTTTCGCAGCCTGCCGACAAACCGGCGGCCGGCGGCGT
GCTGGCGGTGCCGCCGGTCGGGATGAAGAAGCGGGGTCGCCCAAAGGGCTCCACCAACAA
GGTGAAGAAGCAGGACAAGGTCATGTCTGCGCTTGCTTTCATTGGGTCTGCAGGAGCTGG
TTTTACTCCACATGTAATTGCTGTTCAAGCTGGAGAGGATGTAGCTGCAAAGATATTGTC
ATTTGCGCAGAACGGAGTTCGTGCCGTTGTTGTTCTTTCAGCAAATGGTGCCATTTCAAA
CGTGACCCTTCGGCAATCTGCCACTTCAGGTGGGACGGTCACATATGAGGGCCGATTTGA
GATACTGTCACTGTCCGGATCGTTCACCGTGCAAGACACTGGAGGCCATCGGAGCCGAAC
CGGTGGGCTGAGTGTTTCACTCGCAAGTCCTGATGGCCGCGTCTTGGGTGGCGGAATTGC
TGGACTTCTGATTGCCTGCACACCTATACAGGTTGTGGTGGGAACCTTCAACACCGTCGC
CGAGAAGAAGAAGGCGCCGAAGCACCAAGCTGCTGCTGCACATGAACCCGCATCCGCGCC
ACCGAAGATGACGCCGAGCTTCGTGCCCGCGCCGATCTCCGTGCCGCTCGCGCCTGCCCC
TATCAGCGTCGGGATGGCCCAGAACAGCCCACCGTCCAGGGGCACGCTGAGCGAGTCCTC
CGGGAGCCCGATGAACCAGGGCGTCCCGGCGGCGGCCACCCCCAGCAACAGCGGCCTGTC
CAGCATGCCCTGGAAGTGAGGCTCCCTGCCTGCTGCATGCCATCGTCAGTGACCAGCTTG
ACGTAGAACTCTCAAGGAGAAGAAAAACAAAACCTGAACTAGATGTCACCGTTGTCTTAG
CGTAATTTCCTGGTCCAGACTGTTTATTTAGGCGTTGAACTGTTTAATGTTGTCGTCGTG
GATTGTTGTTAGTCCGGATGTCGTGAACCGGGAGTCGGATTATTGTCGTGTCTTGTCGTC
GAGTTTAACCGGTGGTTATGATAAATTTATGAACCTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31470.1	360	6e-101	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	Bradi4g33850.1	384	2e-111
Arabidopsis v10	AT2G33620.1	351	2e-63	AT hook motif DNA-binding family protein \| chr2:14234749-14236563 FORWARD LENGTH=351