barSeed - Barley Seed Development Database

Probe CUST_12268_PI390587928

Source Contig U35_3895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12268_PI390587928	Hv_44K_v2	CTTGACATTTAAGGCCAGTTTGTGGTTTTAAAACTCCCGATACATCATGCTCACAGCAAA	1173	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.304	1.406	1.123	0.928	0.475	0.493
Raw	1161.787	1989.663	1381.703	1768.555	320.733	360.535

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52168.1	3980	2e-24	280 - 339	100	60 / 60	minus	ABC09193
JLOC1	JLOC1_33390.1	1688	8e-25	1195 - 1254	100	60 / 60	plus
Harvest21	ABC09193	1245	2e-21	1174 - 1226	100	53 / 53	plus	ABC09193
Harvest35	U35_3895	1297	3e-25	1174 - 1233	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_3895 1297 Hv_44K_v2
GCACGACAGCAGCCCACGGCAGGCAGCGACGCACCGCTCAGTAGCGGAGCAGCCGCCGCC
GGGCACCGTCAAAACATCCGCCGTCCGGCGCGGTGCCAGCCACCGGCCACCGGCACGCGC
ATCAGCCTCCGCCCACACAGCAGCGGCGCGACTCGGCGAGTGGGCCGAAGCCGACCCACA
AGGCCCCGACCCTACCGGCACACAGCAGCGGCGAGCCAGCGACCCAGATCCCGCAACACC
TTCGCATAGCTGCACCTCGGCGGTGCCCCCTTGGGAGATTTTGTGGCCAGGCGATGGCGG
CGACGCCGCTCCCGCCCCCGCCTCCGGCCGACGGCCCGGCGGCGCTCCCGCCCCCGCCGG
GGACGGACATGACGGGGATCTGCTTCCGCGACCAGCTGTGGCTCAACACCTACCCGCTGG
ACCGCAACCTCGTCTTCGACTACTTCGCCCTCTCCCCCTTCTACGACATCACCTGCAACA
ACGAGTCCCTCCGCTCGCGCCAAATCCACCCCCTCGACATGTCCCAGCTCACGAAGATGA
CCGGGTTGGAGTACGTGCTGAGCGAAGTGATGGAGCCGCACCTGTTCGTGATGCGCAAGC
AGAAAAGGTCCAACTCCGAGAAGGCCGACCCCTTGCTCGCCTACTACATCCTCGACGGCT
CCATCTACCAGGCGCCCCTGCTTGGCAGCGTTTTCGCCTCCCGCATAAGCAGGGCTATGC
ATCATATTTCAAAAGCATTTTCTACGGCATGCTCAAAGTTGGAGAAGATTGGTAATGCTG
AAACAGAGGCTGATGCGGCAGCTTCTGAATCAAAGGCCCAGAAGGAAACAATTGACTTAA
AGGAGTTGAAACGAGTTGATCACATCCTCATGTCTTTGCAACGGAAGCTGCCTCCTGCTC
CTCCCCCTCCACCCTTTCCGGATGGTTATGTCCCAACAGAACAAGAGAAAGGGCCAGACG
ATCTGTTGGCCTCAGAGGCATTGCCTCCTGCAATCGACCCCATCATTGATCAAGGGCCAG
CAAAAAGACCAAGATTTCAATGAGATTGTACCGTCGATCAAGTAAACCGACTGGCACGAT
AATGTCATGTATTGCAGATCGTAAGTAGAGATTTGCAAATTCCTGAGCTGGGAAGGTGCA
GACCATTGTCTGAATGTACACTTCGACTTGATCCTTGACATTTAAGGCCAGTTTGTGGTT
TTAAAACTCCCGATACATCATGCTCACAGCAAAAAAAAAAAAAATCGCTGCTCACAGCAC
TTGATACTAACAAACTAAAAAAAAAGCTCGAGGGGGG

Homology of Contig U35_3895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11370.1	259	5e-116	protein\|mediator of RNA polymerase II transcription subunit 6, putative, expressed
Brachypodium v1_2	Bradi1g45820.1	261	6e-114
Arabidopsis v10	AT3G21350.2	298	4e-60	\| Symbols: MED6 \| RNA polymerase transcriptional regulation mediator-related \| chr3:7517106-7518587 FORWARD LENGTH=298