barSeed - Barley Seed Development Database

Probe CUST_12264_PI390587928

Source Contig U35_3899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12264_PI390587928	Hv_44K_v2	GAGCTGTTATGTTCTTGGTGCCTAGCTTGTTTCTTTAGTTCGTTCTTTTCATATAAATGA	1210	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.245	0.487	1.202	1.960	1.198	1.271
Raw	1270.792	4002.107	8652.340	21776.480	4735.633	5468.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31713.1	390	2e-24	263 - 322	100	60 / 60	plus	ABC09612 ABC46273
JLOC1	JLOC1_20794.1	516	8e-25	263 - 322	100	60 / 60	plus
Harvest21	ABC34543	295	3e-25	61 - 120	100	60 / 60	minus
Harvest21	ABC09612	1316	3e-25	1211 - 1270	100	60 / 60	plus	ABC09612
Harvest35	U35_3899	1319	3e-25	1211 - 1270	100	60 / 60	plus

Contig Sequence (1319 bp)

>U35_3899 1319 Hv_44K_v2
GCTCATTCATCCTCCCCGTCTCTCTCCTCCAGAGCACACAGCACACAGCACAGGCTCCTC
TGAAGGTGACGGCCACGCCTCAGGCGACGCCATTGACATGGCGGACAAGATCTCCACGGT
TGTCCTCAAAGTTGACCTTGAATGCGCCCGATGCTACAGGAAGATGAGGAAGGTCCTCTG
CAAGATCCAAGACAAGATGAACATCAAGACCATCTCTTTCGACGAGAAGAGCAATGCCGT
GACGGTGTCCGGGCCGTTCGACGCCGACAAGCTGTGCAGGAAGCTCTGCTGCGAGGCCGG
CCGGGTGATCAAGGAGATGCACGTCAACGGCAAGGAACAGAAGGCGGAGTCCAAAGGCAA
GGACGACGGCGGCGGCGAGAAGCAGAAGGCGCCCAAGGACGGCGGCAAGGCGGAGAAGCC
CAAGGACGGCGGCGGAAAGCCGGAGAAGAAGGACGCCCCGAAGGCAGACAAGGAGAAGCC
CAAGGACGGCGCGGCCGCCAAGCCGGAGAAGAAGGTCAAGTTCGACGACGCGCCGCCGGC
CTCGGACGCGAAGCCCGGCAAGGCCATGCCGCAGCTGCCGCCCGGCATGAGCATGGCCGA
CCTTGGCCCGCTCCTCGAGAAGATGAAGCAGGCCAAGTTACAGGGCGGAGGCGGACCCCA
GCCGCCGCGCGGCGAGCCACTGGCCCAGCCGATGATCGCGCCACCCGTGGCGGCCCAGGG
TGTGGCCGTGCCGTCCATCTGGCCGGCGCCGGCCGGGCCCATGTCCTACAGCTACGACCC
GACGCCCTACGGCCAGCCGTCGTACTACGGCGGCGGGTGCGGCGGCGGGTGCGGCGGGGG
GTGTCAGTGCTGCAGGCCGGCCGTGCCGGCCGGCGGGTACTACGGCGTGCCGGTGCACGA
CCACCAGGGGTGGTACCACGGCAACCGGCAGCCGTACTACCAGCAGCAGCAGCAGCAGCA
GCAGCCGTACTGCGGCGAGGACCCCAACGCCGGGTGCAGCGTCATGTGATCGACAGACGC
CATGGACAGAGACAGAGCAATCAGGCATCAGTCATCAGTCATCAGTGTGTGTGTGGTCAC
TCACAGTCTCACGTACTCACTCATGGCCTGTGGTTAAAATTTTCCTTTTCTTTTCTTCGT
TCATGTCGTGGCCTTCTTGTTTTCTTTGTGTTTAATTAGGCGTTGAGTTGTGCATGTGAA
CAGAGGAGTTGAGCTGTTATGTTCTTGGTGCCTAGCTTGTTTCTTTAGTTCGTTCTTTTC
ATATAAATGAATATAATACCGTGCCAGTAATTAAGTTGTACTCAAAAAAAAAAAAAAAA

Homology of Contig U35_3899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None