barSeed - Barley Seed Development Database

Probe CUST_12261_PI390587928

Source Contig U35_20904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12261_PI390587928	Hv_44K_v2	TGATCCTTACTATTACCAATTCTCTTAACATGCCCACTGTCTACATCAGCTTCATGCAAA	999	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.454	1.221	1.041	0.942	0.571	0.543
Raw	70.294	89.570	68.850	99.097	20.477	21.633

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74131.5	2722	6e-24	40 - 98	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.2	3300	6e-24	47 - 105	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.1	3333	6e-24	47 - 105	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.3	3417	6e-24	47 - 105	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.9	3022	6e-24	14 - 72	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.6	3250	6e-24	27 - 85	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.7	3217	6e-24	27 - 85	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.8	3326	6e-24	27 - 85	100	59 / 59	minus	ABC13362 ABC13363
MLOC	MLOC_74131.4	3313	6e-24	47 - 105	100	59 / 59	minus	ABC13362 ABC13363
JLOC1	JLOC1_49387.15	3237	3e-24	3158 - 3216	100	59 / 59	plus
JLOC1	JLOC1_49387.14	3255	3e-24	3176 - 3234	100	59 / 59	plus
JLOC1	JLOC1_49387.13	3213	3e-24	3134 - 3192	100	59 / 59	plus
JLOC1	JLOC1_49387.12	3099	3e-24	3020 - 3078	100	59 / 59	plus
JLOC1	JLOC1_49387.11	3042	3e-24	2963 - 3021	100	59 / 59	plus
JLOC1	JLOC1_49387.10	2988	3e-24	2909 - 2967	100	59 / 59	plus
JLOC1	JLOC1_49387.9	2993	3e-24	2914 - 2972	100	59 / 59	plus
JLOC1	JLOC1_49387.8	2960	3e-24	2881 - 2939	100	59 / 59	plus
JLOC1	JLOC1_49387.7	2965	3e-24	2886 - 2944	100	59 / 59	plus
JLOC1	JLOC1_49387.6	2858	3e-24	2779 - 2837	100	59 / 59	plus
JLOC1	JLOC1_49387.5	2978	3e-24	2899 - 2957	100	59 / 59	plus
JLOC1	JLOC1_49387.4	3009	3e-24	2930 - 2988	100	59 / 59	plus
JLOC1	JLOC1_49387.3	2996	3e-24	2917 - 2975	100	59 / 59	plus
JLOC1	JLOC1_49387.2	2985	3e-24	2906 - 2964	100	59 / 59	plus
JLOC1	JLOC1_49387.1	2682	3e-24	2603 - 2661	100	59 / 59	plus
Harvest21	ABC13363	659	5e-23	14 - 72	98	59 / 60	minus	ABC13363
Harvest35	U35_20904	1072	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1072 bp)

>U35_20904 1072 Hv_44K_v2
GCCAATCAAAGGTACAATAGCACGTGGCAGAACACCAGAGGAAGATGAGTGTCTACGTTT
GCAACTGAAATACAGTGAAAAGGACCAGGCTGAGAACTTGATGATTGTTGATCTCTTAAG
AAATGATCTGGGTAAGGTCTGCGAGCCTGGGAGCGTGCATGTTCCTCGCCTCATGGACGT
TGAATCATATAAATCTGTTCACACCATGGTGAGCACCATCCGCGGAACAAAGAAGCCTGA
TCTAAGCCCGGTAGACTGCATCAAAGCCGCCTTTCCAGGAGGCTCGATGACGGGTGCCCC
GAAGGTCAGGTCGATGGAGATCCTCGACGCGTTGGAGAGCAGCCCAAGGGGAATATACTC
GGGGTCGATCGGGTTCTTCTCGTACAACCGCACGTTCGATCTGAACATCGTGATCAGGAC
GGTAGTGCTGCACGACGGGGTGGCCTCGGTCGGAGCAGGCGGGGCGATTGTGGCGCTGTC
AGACCCGGAGGCGGAGTACGCCGAGATGATGCTCAAGGCGAGGACGCCGACGAGGGTCGT
CGAAGAGTGCAGCCAACAAGCGGCGGCGCACAGCAGTCCGGACCGATCGGATTCGGTGCG
GACAACTATAAGCTAGAAGCAGCTCTCTGAAACTAAACCAGCGTGGCAAGGTTCAGCGGA
CATCAACAAGCATGGATTTTGGCCTGACAAGGTAAGCTCATCATCTCTGCTGCGGTTGGC
CTTTGGCAGAAGGAGGGTGGGCTGAAAATCATTGGTGAACAAGAGGGTGCTTGAAAGGGA
TTTTTTTTTTTGTTTTTTAGAGGAAAAGCCGGAAGTGAAGATTTCATGTTGGTGGCCTAG
TAGTAGCATTGACTAGAATATACAGGCAAATCAAATTTTGGCATACATTATTTCGTTTCC
CCCCAAGAATTAAACCAGTGGTAATGCGCACTGATAGCTATTCTTTTTGGGGACGATGTA
GTGTTGGTTTCCCCCCTGTTGTAATCTTACTTAAGAAGTTGATCCTTACTATTACCAATT
CTCTTAACATGCCCACTGTCTACATCAGCTTCATGCAAAAAAAAAAAAAAAA

Homology of Contig U35_20904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48620.1	896	6e-106	protein\|4-amino-4-deoxychorismate synthase, putative, expressed
Brachypodium v1_2	Bradi1g34070.1	905	3e-107
Arabidopsis v10	AT2G28880.1	919	3e-81	\| Symbols: emb1997, ADCS \| para-aminobenzoate (PABA) synthase family protein \| chr2:12398937-12403108 REVERSE LENGTH=919