barSeed - Barley Seed Development Database

Probe CUST_12259_PI390587928

Source Contig U35_20906

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12259_PI390587928	Hv_44K_v2	AGTAGCTAGCTGGAGTTTGGAAGCGATCAATGGCGATCTGCGCGGGCTTCGATTCCTACC	168	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.310	0.736	2.757	1.942	0.854	1.575
Raw	4.270	19.883	66.051	74.090	11.944	23.870

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358313	1563	2e-24	150 - 209	100	60 / 60	plus	None
MLOC	MLOC_14182.1	864	2e-24	682 - 741	100	60 / 60	plus	None
JLOC1	JLOC1_9669.2	2065	8e-25	501 - 560	100	60 / 60	plus
JLOC1	JLOC1_9669.1	2418	8e-25	501 - 560	100	60 / 60	plus
Harvest21	ABC17347	507	3e-25	141 - 200	100	60 / 60	plus
Harvest35	U35_20906	535	3e-25	169 - 228	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_20906 535 Hv_44K_v2
TCGATTACTGTTGGCCGACTGGCCCCATTCTTCTTCCACATCGCTACGGCTACGAGATCC
ATCTGCTCCGTTTCTTGGGTTGCTCCGTGCTTCGGCCGGTGCTTGGCTACGCGTCCCGTT
GCCTGCCCTTGTTGACCGGGCCGGAGAGCTCGGAGGCTTCACGAGGGGAGTAGCTAGCTG
GAGTTTGGAAGCGATCAATGGCGATCTGCGCGGGCTTCGATTCCTACCGGGCGTCGCCGG
CGGACATGCGGGTCGTGACGTCGGACGGGCAGAGCATGGCCGCGCACTCCTACGTTCTTG
CCTCGGCGTCGCCGGTGCTGGAGCGGATGATCGACAGGGCGCAGGGCGGGTGGGGCGCCG
AGTGCACCATCCGCGTCCTCGGCGTGTCCTACGACGCCGTCCACGCCTTCATCCACTTCC
TCTACTCCCCCAAGTGCAAGGTGGTGCCCGCGGAGGAGGAGGCGGTGGGCGCGAACTGGG
CGCAGGTGCTGGCGCTGGCGCACGCGTACCGGGTGGGGTGGCTGAAACGGGCGGC

Homology of Contig U35_20906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g13663.1	338	8e-51
Arabidopsis v10	None