barSeed - Barley Seed Development Database

Probe CUST_12255_PI390587928

Source Contig U35_20910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12255_PI390587928	Hv_44K_v2	TTGATGTCCAAAGCGTTGATTTTGGTTGAGTTGGGCATATTCTTCTTCTGAGCCAAATGT	1139	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	1.617	1.070	0.869	0.367	0.399
Raw	621.388	926.422	536.080	687.609	102.328	119.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14072.3	1116	5e-22	997 - 1058	97	60 / 62	plus
JLOC1	JLOC1_14072.2	989	5e-22	870 - 931	97	60 / 62	plus
JLOC1	JLOC1_14072.1	1376	5e-22	1257 - 1318	97	60 / 62	plus
Harvest21	ABC13308	1199	3e-25	1140 - 1199	100	60 / 60	plus	ABC13308
Harvest35	U35_20910	1199	3e-25	1140 - 1199	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_20910 1199 Hv_44K_v2
TGGCACACGTCTTCCTCACCTCTCCTCTCTCTCTCCATCCACCACCACGGTCATCCTCGC
ACGAATCCCTTTCAAAAAATTTAAGACCACGCCCCAGATCACATCGAATTCACCACCACC
GCCTCCCTCCCTCCCTCCTTCCGTGCTTCCATTTTCTTTCCCCCCCTCGTGCGCCTCGCC
ACGAGCCGACAAGCCGCGGGCAGAGATCGATCGCGATCGCCCCCAGCCATGTCGACCTCG
CGCAGGCGGACCCTCCTCAAAGTCATCGTCCTCGGCGACAGCGGGGTCGGGAAGACGTCG
CTGATGAACCAATATGTTCACAACAAGTTTAGCCAGCAGTACAAAGCTACCATTGGTGCG
GATTTCGTCACCAAGGAGGTCCTCATTGAAGACAGGCTTGTCACATTGCAGATCTGGGAC
ACTGCGGGGCAGGAGAGATTCCAGAGTCTTGGTGTCGCATTCTACAGAGGGGCAGATTGT
TGTGTGCTTGTTTATGATGTCAATGTTAACAAGTCATTTGATACGCTCAACACATGGCAT
GATGAGTTCCTCAACCAGGCTAGCCCATCAGATCCCAAAACATTCCCATTCATCCTACTT
GGGAACAAGATTGACGTAGATGGTGGCAAAAGCAGAGTGGTTTCTGAGAAAAAAGCTATG
GAGTGGTGTTCTTCAAAAGGCAATATTCCTTATTATGAAACTTCTGCAAAAGAAGACTAC
AACGTCGATGAAGCATTTTTGTCTGTTGCAAAGCTTGCTCTAGAGCATGAGCGTGACCAG
GACATCTACTTCCAAACAGTCGCAGATCCTGTCCCCGAGACTGAACAGAGAGGCGGGTGT
GCATGCTAGCGTTTAGCCGTCTTTGTCCTTCCAGATTTTGCCTGCTGTGTGTGGTATTCT
TTTTAAGTGATGCTCGGCATTCCTTTTGAGTTGACAATGTACACTAGGGTGCCTATGCAT
CCACTCCATTCACTTTTGTAACCCATGTAAGATAGTTAGCAACTATGGCTTCGGTTCACC
GAATACTGATGAGCAGCCCGCCCTGTTTCTTGAGTCGGCAATAAGAGTGCAAAGTGGTAC
TACTGATACAATTTGGGATATGGCCTAAGCCTCAATTATATTCATGCAGCTGTAACTTAT
TGATGTCCAAAGCGTTGATTTTGGTTGAGTTGGGCATATTCTTCTTCTGAGCCAAATGT

Homology of Contig U35_20910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51700.1	208	3e-138	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g48120.1	343	4e-148
Arabidopsis v10	AT1G22740.1	203	9e-115	\| Symbols: RAB7, ATRABG3B, RAB75, RABG3B \| RAB GTPase homolog G3B \| chr1:8049247-8050494 FORWARD LENGTH=203