barSeed - Barley Seed Development Database

Probe CUST_12246_PI390587928

Source Contig U35_20919

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12246_PI390587928	Hv_44K_v2	GTTGTTGCTGTTGTTGTCAGAAAACAGAGTTCTATTGTATTCTATTCTGTTTCTGCCTCA	885	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.528	5.641	0.984	0.992	0.729	0.562
Raw	71.992	124.538	17.598	27.966	6.224	5.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368171	944	2e-24	845 - 904	100	60 / 60	plus	ABC13608
MLOC	AK356314	1104	6e-24	1046 - 1104	100	59 / 59	plus	ABC13608
JLOC1	JLOC1_40802.2	1080	8e-25	921 - 980	100	60 / 60	plus
JLOC1	JLOC1_40802.1	1126	8e-25	967 - 1026	100	60 / 60	plus
Harvest21	ABC13608	961	3e-25	886 - 945	100	60 / 60	plus	ABC13608
Harvest35	U35_20919	961	3e-25	886 - 945	100	60 / 60	plus

Contig Sequence (961 bp)

>U35_20919 961 Hv_44K_v2
CCATGATCGGCTCCTTCCTCCCCCTCCCCACCACCACCACCTCCGGCCGCTGCCTTCCGC
CCCGCCCCTGCACCATCCTCCCCTTCCCAACAGCCCCGCTCCGCCTCGGCCGCCGCCGGA
TCCGCGTCTCCGTGTCGTCGGAGAGCAACGAGGAGGGCGTGGGGAGCACCAACGGCTCGC
TGCCGGGGCTTCCCCCCGTGGGCGAGGAGGAGGAGGACGACGAGTCCTGCCCGGTGGAGT
GCGTGACGGAGTTCAAGACGGACGAGGAGTTCAGCCGGTTCCTGGAGCGGTCGAGGGCGA
CGGGCGCGCTGGTGGTGGTGGACTTCTTCCGGCCGTCATGCGGCAGCTGCAAGTACATCG
AGCAGGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCATCTTCC
TCAAGCACAACGTGATTGACGAGTACGACGAGCAGTCGGAGGTGGCGGACCGGCTGCGCA
TCAAGGTGGTGCCGCTCTTCCATTTCTACAAGGCCGGGGTCTTGGTCGAGTCCTTCGCCA
CCAGGGACAAGGAGAGGATCACCGCCGCCATTGCCAAGTACACATCCCCTCAGCAGGAGA
AGGAGACGGAGACGGAGCCGGAGGAGTAATTTCTACTCCAAATACATACAGACATCAAGA
GCCATCTAGCTAGACTGGTAATCGAGTGGTCTGCCAAAATGAACCTGCATTGTAGCAGGA
AGAACTGGGATTGGTTGTAATAATAAAGCAGAGCATCATGAGATATAGTTGTAAACAGAG
AGATCGAGGTAGAATGGCCGAGGATGGATCCTGCCATTCCCGATCCAGCGACCCCCCCGT
TGTAAACAGGCAGACCTGATCATTTCAACACCTGAGTTCTACACTGTTGTTGCTGTTGTT
GTCAGAAAACAGAGTTCTATTGTATTCTATTCTGTTTCTGCCTCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_20919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35900.2	207	1e-67	protein\|thioredoxin, putative, expressed
Brachypodium v1_2	Bradi3g46420.3	204	4e-78
Arabidopsis v10	AT1G07700.3	217	1e-56	Thioredoxin superfamily protein \| chr1:2380297-2381127 FORWARD LENGTH=217