barSeed - Barley Seed Development Database

Probe CUST_12239_PI390587928

Source Contig U35_18606

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12239_PI390587928	Hv_44K_v2	CTGGTGTGGTTTGGAACAATTTCGTCTATGTGCTCGTTGTTGCTTGACCCAAATTGTAAA	882	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.437	1.668	0.964	1.072	0.431	0.989
Raw	23.229	43.452	21.681	36.819	3.318	13.105

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54358.1	3007	8e-25	2897 - 2956	100	60 / 60	plus
Harvest21	ABC09734	945	3e-25	4 - 63	100	60 / 60	minus	ABC09734
Harvest35	U35_18606	945	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_18606 945 Hv_44K_v2
CGGGCCAGACATCATGGAGTGGAACATACTCTGACCAATTCAGTTCCACGGCAGGGGCTA
GGTCACCTGACGGACCGATTGTGCCCTCGCCACAAATGCCTGGCAGACCCCCCTCGCACA
GTCGTTCCAACAGCAACTCGTCCGTCCAGTTTACCGGTTTAACGGAGGATCTTCACGAGG
TTGAGCTCTGACAGGTGAGGTGACGGCTCAGCATAATGCCCACACAACCTTGGTTAACCG
CGTCTCTTCCAGCAAACCCCAACTAAGTTAAAAGGTGAAAGGAGCTGTTCACAGCGAATC
AGCTGATGATCGCCAGGGACAGAGATGAACAGGCCTCGCCTCCAATTTTGAATGAAACCT
TGGGGGAAACCGCACCGAAACTGAGGTGCGCCAGACGCGTACTACACAAGTACAGTCTTG
GTTTTTTGAGTATTTAGTAGCTATATGTTGTTTGTTATTATGTATTTACTAGAGCGCGGG
AGAAAAGAGCCGGGCATCCTTTTTTTTCGTTGCGTGCGAGGAAAAGCAACATCTGGATGC
CATTGTACAGATAATCCGCCTCTACCCCGATTCATTGTTTGAAGGCGCAAACCAGTTCAC
CCCCTCATTCTTTTTTTGATTTTGATGAGAATAGAAGATAGAGATAATCTGTCTATCATT
CTAGTGTAAGAAAGGAAAGCCCAGCCACGTTGTAGAAAGTGTTGTTGTTGTTATACTTGT
CTGTACTTGCTCCCATACCATGGTATATTGTGTTGTATTGTATTATTCTTTGGAGATGAT
TCAATTCTTTTGCCTCGGTTAAACGCATAAAAGAGCTCATTGCCCCTTGTGAGTTGATAG
CTGTTGTATTCAGCAAGTTCTTTGTTTTTTTCTTGATCTTGGCTGGTGTGGTTTGGAACA
ATTTCGTCTATGTGCTCGTTGTTGCTTGACCCAAATTGTAAAACT

Homology of Contig U35_18606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None