barSeed - Barley Seed Development Database

Probe CUST_12238_PI390587928

Source Contig U35_18607

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12238_PI390587928	Hv_44K_v2	GCAAAACAGCTATGATTTGTTCTTCTTCCCAAGCAAAATAAAACTGTGCTTACAAGAGAT	863	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.136	4.620	1.823	0.620	0.091	0.118
Raw	2674.333	2327.724	765.497	434.807	21.238	31.194

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75604.1	1156	2e-24	39 - 98	100	60 / 60	minus	None
JLOC1	JLOC1_50439.1	985	8e-25	38 - 97	100	60 / 60	minus
Harvest35	U35_18607	968	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (968 bp)

>U35_18607 968 Hv_44K_v2
GCAAGAAACAAAGTAGCGCACGAACTATGGCTGCCATGGCCGAGCGCCTCGTGATCGGCA
CCCTGCTGGCCGCCGCCTTCCTGGCGTCATCCGCATCGGCATCGGCGGCGGACACCACCA
GGCTGACCCTGCACAACCTGTGCCCGTACCCCGTGTGGCCGCTGGTCACCCCGAACACGG
GCTTCCCCGCCATCTGCGACAACGCCGTCCGCCTCGAAGGCAACGGCCACGGACTCGTCT
CCTTCACCTTCCCGCCAACCTTCTGGGCCGGGCGCCTGGTGGCGCGCACCGGCTGCACGT
CGCCGTCGCGGTGCGAGACGGGGAACGCGCGGCCCGTGGGCGTGGTGCAGCTGGCCGTGC
ACTCGGCCGAGGGTGGCGGGCATCGGCAACAGGACCTGGCGGTGTACAGCGTGAGCCTGG
TGGACGGGTTCAACGTGCCGGCGGTGGTGAGCCCGCAGTCCATCGGCGGCGACGGGCCGT
GCCCGGCCCTGGGGTGCGCGGCGGACCTGAACGCCGGGTGCCCGCCGGCACAGCGCGTGG
TGGGCGCCGGCGGCCGCGTGGTCGCGTGCAAGGGGCCGTCCGGGTACTTCAAGCAGCGGT
GCCCGCTGACGCGGACGACGCCGATCGACAGGGAGCCCGTGCCGCAGAACTGCCACGCGC
CCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCCGCGATGGTCGACGCCGACGCCGCCGCAC
AGCCGGAAATCGGCGTCGCCAAGAACTAGCTAGCTGGGCACTAGCGCGTGCTGTTGACAT
ACACGTATAAGGTGCGGTTGTGAAAATAAGGATGGCACGTATAGTGTGGAGTAGCTCAGT
CGGCAGGCCCACTGCTAAGATCGGCAAAACAGCTATGATTTGTTCTTCTTCCCAAGCAAA
ATAAAACTGTGCTTACAAGAGATTTTAAAAAAGAATATAAGGTGCGGTTGGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_18607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38150.1	234	2e-91	protein\|osmotin, putative, expressed
Brachypodium v1_2	Bradi4g04180.1	230	5e-71
Arabidopsis v10	None