barSeed - Barley Seed Development Database

Probe CUST_12236_PI390587928

Source Contig U35_18609

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12236_PI390587928	Hv_44K_v2	TAGTGCCTGCCATCATGAATCAGTTATATGCCATCATGAATCAGTTATATCCTCAAAAAA	1581	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.989	1.823	1.106	0.750	0.246	0.362
Raw	630.574	888.507	473.170	510.022	58.521	94.225

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8450.1	1260	2e-21	1194 - 1247	100	54 / 54	plus
Harvest35	U35_18609	1652	3e-25	1582 - 1641	100	60 / 60	plus

Contig Sequence (1652 bp)

>U35_18609 1652 Hv_44K_v2
AACATTTCCATAGTTCCATTCCACAATCGTCTTCTTTCGCCCTCTCCCTCCCGGCGACTC
TTCCCCCCTCCTAGGGTTTTACCCCGGCGATCTCCCCCACTCCCTCTGCCCTCGCCCTCG
CCGTGCCGAGCCACCCGCTGAAAAATGGCGGAGGTGGAGGACGTCAGCAACAGGATGGAA
GCGCAGCTGCGCGTCCACGCGGCGGAGGACGACGCCGATCTCCCGCTCCCTGCCCTCTTC
GACAGGGCGTCCCACCTCCACGCGCTCGCCTCCAGCTCCTCCCTCGACCAGGAAGGGATC
CGGAAGGGGGTCGACCTGCTGCGGCGCTGCGACGAGATGGTCAGCAAGCTCGGCCTCTTC
TCCTCCAACGAGACCAAGGAGGACATCTCCACCGCCAATCTCAAGTACTTGCTCGTGCCG
TACTACCTTGGGGAAATGATTGAGCAAGTGGAGCAGGAAGACCGGATTCCAGTCCTCAAG
GCATCACAGGACCATTTAAAGGAGTTCATTTCTGTGTGTGAAGCATTGGAGCTTATTCCA
GAGGCTGAGCTTCAATTATATAGACAGGGGCAGTCTGAAACCGGGGCAAACCGAAGAGCA
CAAAAGGTTGCCAGGTACAAGCGGCAAAAGGCTGCAGAAATGAAGCTCCAAGAGATCAAA
CAGAGAAAGGAAAGGCGTGGGCGCTCATTGAGAGCAACGGCTTTATCGGCACCTATCGAA
GCCGGGGAAGAAGATGATTTGGAGGGCGATGGAGAGGAAGAAAGAGAGGCTTGGCTTGCT
ACTATCTCGTTGTCTCTCTGCAAGGCTTTTGATCTTGTTGACATGTTAAAGAAGGAAGAA
GAGATGCTTCTGGCTGTAAAAGAAAGAAAAGAAAAGGATGGAAATGCATTTGCTCGAGAA
ATGCTAGATGAGCGTAGGCAAAAGGCTGAAGAATGGCACCATAATGCTGCCAGCCGTGCA
CCATATTCCAAACCAGCTGCTCCAATCACTTGTGCAACTTTTGCTCAAGACGTCATTGAA
GGCAGAGCAAGTGTTTCACAAGCTCATGACCACAAACACCAACCCCTGATATTTGGACCT
GCAAGTCTTGTTGGTGGGGGACTCACCAGTGAGAGGGAAAGAATGGCAGCACAAGTTTTT
CAGCCTAGTTTCAGGATGCCGACAATGAGCATCGAACAAGCCGGCCTAGCTGAAATGAAA
ATGATGGAGCAATGGCAAGAAAGTACCGCCAAGATGATTCAAGAGGCAAGCTCCTCTTGG
CACAAGGATGACACTAGTTTGGCGCAGGACGACGAGGACGCAGAAGAGGAGAAAGCAAGG
GCATGGGATGACTGGAAGGATGAAAACCCACGCGGCGCAGGCAACAAGAAGCTTACTCCA
TGTGGCTAATTTAAAAGCTATTGACACTGCACTGAAGATACCACATGTAGCTGATGTTCA
TATACCATATAACATTTCTGTTATTTCCCCTCACGTTTGCAAGAGTATTGACCAGAGTAC
ATTATTTGTAGAAACGTTGTGCAAGTGCATCATTTCATCAATATCCCCTTTTTTTAGGTG
TCATCCGTATCTTTACTGATGTAGTGCCTGCCATCATGAATCAGTTATATGCCATCATGA
ATCAGTTATATCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g04290.1	419	0.0	protein\|PP2A regulatory subunit TAP46, putative, expressed
Brachypodium v1_2	Bradi4g43230.1	420	0.0
Arabidopsis v10	AT5G53000.1	405	2e-149	\| Symbols: TAP46 \| 2A phosphatase associated protein of 46 kD \| chr5:21485654-21487869 REVERSE LENGTH=405