barSeed - Barley Seed Development Database

Probe CUST_12234_PI390587928

Source Contig U35_20921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12234_PI390587928	Hv_44K_v2	GTTTTCAGGTTCTTTGGTGTTTGGTTCTATGGATAACCACCGCGAAGCAACACTCATGCA	553	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.352	0.519	1.192	1.672	1.124	0.976
Raw	80.101	187.099	376.459	820.062	193.493	185.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67684.1	1044	7e-23	388 - 447	98	59 / 60	minus	None
JLOC1	JLOC1_44714.1	1095	4e-23	429 - 488	98	59 / 60	minus
Harvest21	ABC29978	220	1e-23	11 - 70	98	59 / 60	plus
Harvest35	U35_20921	769	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_34072	742	1e-23	228 - 287	98	59 / 60	minus

Contig Sequence (769 bp)

>U35_20921 769 Hv_44K_v2
GCTCGAGCGGCCGCTGCCAACCCTCACGACGGACATGTCGGGCTGGTGGTCCAATGTGAG
GATGATGATTCGGCACAGGACATGGACGAAGTTATAATTTGAAGCGTGTTTTAATTAACA
CAGCCTTTGCTCATACAGACAAAGGAGAAGTGTGGTGCACAGGTAGGGATATCGAATGGT
GAAACTATATACTTAAAAGCATGGTAGCTTTCCAGCCAACAACAATTGTTGGGGTATGGC
AAATACTGGATCACGGCATTGTAGAAAAGCTATATGCTTTAAGTAATTGTCCCTGTATCA
TATCAGCTGAGAAAACTTGTATTTCCCTTTGAAAGGTGTTCAAGTAACTAAAGTATTGTC
CCTGGAACATATATTTCAACAAGTTCTACTATTCCGGTGAGCGGCCGCTCCGACCTCGAC
CTCCTAGTCCGTCGGCCTAGCCTCGTTACTTTTGATGCGAGGGATGTGCCACTATCAGAC
TCCTTGCATCAGCAATGTTGATTTCATTGCAATACGATGACTCAATTCATGCAGCTCGCG
TTGCATGTTTGTAGTTTTCAGGTTCTTTGGTGTTTGGTTCTATGGATAACCACCGCGAAG
CAACACTCATGCAGATGAGCTCTTGGATTGCAACGTACGTCCCCTACTTCCTCTTTCACA
ACAACTACGAGCACCTCGCCACATGATCCAACTCCTCCGTGTTGGACTGCTTGTTGGCGG
TGTGCAGTTTCCACGTGTTGCGTGTGCGATTCAATTTTCCTTGCGTGCA

Homology of Contig U35_20921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None