- Probe CUST_12229_PI390587928
- Source Contig U35_20926
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12229_PI390587928 | Hv_44K_v2 | CTATGTTTCCATAGCGACAGAAACGATATTTCTGAATAAAGCTCTTTGTTTCCGACTTAA | 458 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.577 | 3.104 | 1.390 | 0.420 | 0.062 | 0.057 |
| Raw | 22517.200 | 19508.393 | 7598.960 | 3420.520 | 197.136 | 191.970 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_36680.1 | 414 | 5e-22 | 1 - 55 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC13727 | 533 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | ABC13727 |
| Harvest35 | U35_20926 | 533 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus |
Contig Sequence (533 bp)
>U35_20926 533 Hv_44K_v2 TGAAGACAGCATATCTGCTTACACATCTAGGCATACAGATCAGCATGGAGATCAAGCCAG CGGTGATCCTCGTGGCCTGTTTGTTATTCGGTATTAGCAAGAGAGGCAGTGCAGCAGGGT GCAGAACTTCAGATCTTGTTGTGACCTCGCAGACCTACCCGGATCCGGGAGGAAGGCCAG TGCAATACTGGAAGCTGGTGAACAACTGCGGCTGCCCACAGAAGAACGTGAAGCTGGCGT GCATGGGATTCAGCTCTTCCATCGAGGTCTACCCAGACACATCCATCAAGCCGGACGGCG ACGGCAAGCTGTGCTCCCTCTACGGCGGTCGCCCGGTTGGGCCTAAGGAGAAGGTCTTCT TCGACGTTCACTCGAGTACCCAGTTCAGCTTCCAAGTCGTCTCCTCCACCATTGTATGTT AGATATACTGCGAATGATGATATCATGTCATATCAAAACTATGTTTCCATAGCGACAGAA ACGATATTTCTGAATAAAGCTCTTTGTTTCCGACTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_20926 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |